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|Alternative name||plasmid Multilocus Sequence Typing|
|Interface||Web user interface|
|Restrictions to use||None|
|Input data||A sequence in one-letter nucleotide code or in a file.|
|Output data||The sequence type (ST) that the server associated to the dna sequence you submitted, a table containing more detailed results for each gene and allele, a summary of the setting used in the executed, result files for download and an optional graphical description of the alignment for each of the loci against the allele on the selected mlst scheme that had the best alignment score.|
|Biological technology||Illumina, Roche|
- person_outline Henrik Hasman
Publication for plasmid Multilocus Sequence Typing
Draft Genome Sequence of Escherichia coli KL53
[…] .93% identity] by PlasmidFinder (https://cge.cbs.dtu.dk/services/PlasmidFinder/). An exact match of IncI1 plasmid genes repl1-ardA-trbA-sogS-pilL with database alleles 1-4-17-1-3 was determined using pMLST (http://pubmlst.org/plasmid/).The KL53 strain includes multiple heavy metal resistance genes for zinc (znuC, znuB, zupT, and zntB), copper (copA to copD), a cation efflux system for silver and o […]
Draft Genome Sequence of the First New Delhi Metallo β Lactamase (NDM 1) Producing Escherichia coli Strain Isolated in Peru
[…] me Annotation Pipeline (PGAP) v.3.2, whereas whole-genome sequence data were evaluated through bioinformatics tools (i.e., ResFinder v.3.0, VirulenceFinder v.1.5, MLST v.1.8, PlasmidFinder v.1.3, and pMLST v.1.4) available from the Center for Genomic Epidemiology (http://www.genomicepidemiology.org/).Multilocus sequence typing (MLST) showed that carbapenem-resistant E. coli 2ECMBL belongs to seque […]
Impact of human associated Escherichia coli clonal groups in Antarctic pinnipeds: presence of ST73, ST95, ST141 and ST131
[…] bitbucket.org/enterobase/enterobase-web/wiki/Escherichia%20Statistics. Antimicrobial resistances, plasmid detection and typing were in silico determined by using ResFinder V2.1 and PlasmidFinder 1.3./pMLST 1.4., respectively. […]
Complete Nucleotide Sequence of an Escherichia coli Sequence Type 410 Strain Carrying blaNDM 5 on an IncF Multidrug Resistance Plasmid and blaOXA 181 on an IncX3 Plasmid
[…] tion using Subsystem Technology server (RAST [http://rast.nmpdr.org]).Plasmid replicons were detected using PlasmidFinder version 1.3, and incompatibility group F (IncF) subtyping was performed using pMLST version 1.4 (). blaNDM-5 was detected on a 110,959-bp plasmid (pAMA1167-NDM-5) belonging to IncF and pMLST type [F1:A1:B49]. Besides blaNDM-5, 16 other resistance genes were detected on pAMA1167 […]
Extended spectrum beta lactamase (ESBL) producing Escherichia coli and Acinetobacter baumannii among horses entering a veterinary teaching hospital: The contemporary 'Trojan Horse'
[…] mid replicon detection revealed a high variety of different types of plasmids including Inc/Rep types IncFIA/B and IncFII, which are commonly found in ESBL-producing E. coli. One IncFIA plasmid type (pMLST type F-:A8:B-) was present in 15 of the 41 tested E. coli assigned to 13 different STs, originating from 15 different animals. However, the genetic makeup of resistance genes differed between th […]
In Situ Analyses Directly in Diarrheal Stool Reveal Large Variations in Bacterial Load and Active Toxin Expression of Enterotoxigenic Escherichia coli and Vibrio cholerae
[…] To perform initial functional analysis, we used the CGE pipeline v 1.1 (), which performs resistance gene prediction using ResFinder, in silico MLST, plasmid prediction, and pMLST. Resistance gene prediction was also performed by ARG-annot (http://en.mediterranee-infection.com/article.php?laref=283%26titre=arg-annot).Whole-genome alignment was performed and visualized usi […]
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