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PMN specifications


Unique identifier OMICS_02764
Name PMN
Alternative names Plant Metabolic Network, PlantCyc
Restrictions to use None
Maintained Yes


  • Plants and Fungi
    • Populus trichocarpa


  • BarleyCyc

Publication for Plant Metabolic Network

PMN citations


Metabolome Integrated Analysis of High Temperature Response in Pinus radiata

Front Plant Sci
PMCID: 5914196
PMID: 29719546
DOI: 10.3389/fpls.2018.00485

[…] d against an in-house library (>100 compounds) and manual annotation considering m/z and retention times. In the second step, masses were assigned using the KEGG, PubChem, METLIN, MassBank, HMDB, and Plantcyc databases as reported by with built-in MZmine plugins with a 5 ppm threshold and considering as “identified” beyond doubt those metabolites that were defined after the comparison to our stan […]


Identification of Wheat Inflorescence Development Related Genes Using a Comparative Transcriptomics Approach

Int J Genomics
PMCID: 5822904
PMID: 29581960
DOI: 10.1155/2018/6897032

[…] Pathway assignments were based on KEGG pathway mapping ( and keyword search of the plant metabolic pathway databases ( […]


In vivo validation of anti malarial activity of crude extracts of Terminalia macroptera, a Malian medicinal plant

Malar J
PMCID: 5800286
PMID: 29402267
DOI: 10.1186/s12936-018-2223-7
call_split See protocol

[…] significant features (m/z, RT pairs) were calculated with MS-FINDER 2.10 []. Only natural product databases focused on plants were selected [i.e. Universal Natural Products Database (UNPD), KNApSAc, PlantCyc, Dictionary of Natural Products (DNP, CRC press, v26:1) and CheBI]. Database interrogation was performed following a three-step process. Already known compounds belonging to the plant species […]


Targeted and Untargeted Metabolic Profiling of Wild Grassland Plants identifies Antibiotic and Anthelmintic Compounds Targeting Pathogen Physiology, Metabolism and Reproduction

Sci Rep
PMCID: 5786025
PMID: 29374230
DOI: 10.1038/s41598-018-20091-z

[…] tification of compounds was conducted using Progenesis QI (v.2.2) software. To identify and visualize the biosynthetic pathways associated with each compound, we used the OmicsViewer developed by the Plant Metabolic Network (PMN). […]


RNA Seq analysis of resistant and susceptible sub tropical maize lines reveals a role for kauralexins in resistance to grey leaf spot disease, caused by Cercospora zeina

BMC Plant Biol
PMCID: 5683525
PMID: 29132306
DOI: 10.1186/s12870-017-1137-9

[…] /index.html) to assist in avoiding mis-priming to non-specific targets. Primer information is maintained in Additional file . Names of genes are abbreviated as per the Enzyme Commission Synonyms from Plant Metabolic Network (PMN) on, July 2015.Expression analysis was performed on the ABI 7900HT Fast Real Time PCR (Life Technologies, Carlsbad, California, United States) instrument […]


Proteomics Coupled with Metabolite and Cell Wall Profiling Reveal Metabolic Processes of a Developing Rice Stem Internode

Front Plant Sci
PMCID: 5507963
PMID: 28751896
DOI: 10.3389/fpls.2017.01134

[…] before 2 min was removed. Every sample was normalized to an automaticly determined reference sample based on all compounds. We applied ChemSpider to search against a Plant metabolic pathway database (PlantCyc) and MetaScope to search against a custom rice metabolite database extracted from the Human Metabolome Database. For both methods, the identification parameters were: precursor mass tolerance […]


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PMN institution(s)
Department of Plant Biology, Carnegie Institution, Stanford, CA, USA

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