PocketAlign specifications

Information


Unique identifier OMICS_12900
Name PocketAlign
Interface Web user interface
Restrictions to use None
Input data Binding site structure
Input format .pdb
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Nagasuma Chandra <>

Information


Unique identifier OMICS_12900
Name PocketAlign
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Binding site structure
Input format .pdb
Operating system Unix/Linux
Programming languages C
Computer skills Advanced
Version 1.1
Stability Stable
Maintained Yes

Versioning


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Maintainer


  • person_outline Nagasuma Chandra <>

Publication for PocketAlign

PocketAlign in publication

PMCID: 5624866
PMID: 28970579
DOI: 10.1038/s41598-017-12471-8

[…] of using pmsmin scores for identifying similar ntp binding sites is shown in section 2.5., binding site alignments at the structural level were performed using another in-house algorithm called pocketalign. pymol (version 1.2r1 from www.pymol.org) was used for structural analyses and generating images. sequence-based atp site prediction tools nsitepred and atpint were used for comparing […]


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PocketAlign institution(s)
Bioinformatics Centre, Indian Institute of Science, Bangalore, India

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