PocketAnnotate specifications

Information


Unique identifier OMICS_13738
Name PocketAnnotate
Interface Web user interface
Restrictions to use None
Input data An apo protein structure, PDB code of protein bound with a ligand, an own sub-structure (any zone of continuous/discontinuous residues in structure) for comparison.
Input format PDB
Output data The results produced by all three algorithms are displayed on separate html pages during the pipeline. PocketDepth predicts the putative binding sites, PocketMatch results are displayed in a scroll bar along with the scores in a separate html page, PocketAlign results are displayed in a separate interactive window, with both the selected sites superposed and report the correspondences between the residues in the pair aligned with RMSD scores.
Computer skills Basic
Stability Stable
Requirements Java
Maintained Yes

Documentation


Maintainer


  • person_outline Nagasuma Chandra <>

Publication for PocketAnnotate

PocketAnnotate institution(s)
Department of Biochemistry, Indian Institute of Science, Bangalore, India
PocketAnnotate funding source(s)
This work was supported by Department of Biotechnology (DBT); Government of India.

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