PocketAnnotate specifications

Unique identifier:
OMICS_13738
Restrictions to use:
None
Input format:
PDB
Computer skills:
Basic
Requirements:
Java
Interface:
Web user interface
Input data:
An apo protein structure, PDB code of protein bound with a ligand, an own sub-structure (any zone of continuous/discontinuous residues in structure) for comparison.
Output data:
The results produced by all three algorithms are displayed on separate html pages during the pipeline. PocketDepth predicts the putative binding sites, PocketMatch results are displayed in a scroll bar along with the scores in a separate html page, PocketAlign results are displayed in a separate interactive window, with both the selected sites superposed and report the correspondences between the residues in the pair aligned with RMSD scores.
Stability:
Stable
Maintained:
Yes

PocketAnnotate support

Documentation

Maintainer

  • Nagasuma Chandra <>

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Publications

Institution(s)

Department of Biochemistry, Indian Institute of Science, Bangalore, India

Funding source(s)

This work was supported by Department of Biotechnology (DBT); Government of India.

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