POINeT specifications

Information


Unique identifier OMICS_11009
Name POINeT
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Taxon


  • Invertebrates
    • Caenorhabditis elegans
    • Drosophila melanogaster
    • Plasmodium falciparum
  • Plants and Fungi
    • Arabidopsis thaliana
    • Saccharomyces cerevisiae
  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus
    • Rattus norvegicus

Maintainer


This tool is not available anymore.

Publications for POINeT

POINeT in publications

 (5)
PMCID: 4866967
PMID: 27121963
DOI: 10.3892/ijmm.2016.2577

[…] a combination of multiple databases to construct the network. although the protein interactions in the different databases largely overlap, the databases are complementary (). we made use of the poinet bioinformatics tool to form the human ppi network. poinet is currently a relatively popular construction tool that integrates ppi information collected by various protein databases, including […]

PMCID: 4149362
PMID: 25170921
DOI: 10.1371/journal.pone.0103047

[…] a query-query ppi (qqppi) network, i.e., a network of protein-protein interactions consisting of query nodes only. secondly, brain tissue specific and experimentally verified data was taken from poinet (http://poinet.bioinformatics.tw/) to create another qqppi network. the two networks constructed by genes2fans and poinet were separately viewed using the open source network visualization […]

PMCID: 3536619
PMID: 23300433
DOI: 10.1371/journal.pcbi.1002860

[…] a brain-specific protein phosphorylation pathway relevant for alzheimer's disease., several methods exist to create subnetworks of the human interactome based on context criteria. for example, poinet integrates the major ppi databases and allows the creation of tissue-specific networks. to our knowledge we are the first to combine edge directionality, gene expression and functional […]

PMCID: 3419070
PMID: 22712476
DOI: 10.1186/1471-2121-13-15

[…] such as fancd2fanci and hyls1[,]. future efforts will be directed to analyze those that still do not have defined mitotic functions (marked by “?” in additional file : table s6)., we then used poinet website to obtain the “sub-network specific” ppi data with the 64 core centromere/kinetochore proteins collectively as a query group (see methods for details) [,]. the tool was chosen mainly […]

PMCID: 3278837
PMID: 22373040
DOI: 10.1186/1471-2105-12-S13-S20

[…] intensities in the disease sample groups as comparing to the control., the most highly expressed genes and abnormally expressed genes were located on the human ppi network by an updated version of poinet [] to construct a query-query ppi (qqppi) or level 1 ppi (l1ppi) networks. the updated version of poinet contains the databases listed in table and has not been published. qqppi networks […]


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POINeT institution(s)
Institute of Clinical Medicine, National Yang-Ming University, Taipei, Taiwan, China; Institute of Biotechnology in Medicine, National Yang-Ming University, Taipei, Taiwan, China; Institute of Bio-Pharmaceutical Sciences, National Yang-Ming University, Taipei, Taiwan, China; Institute of BioMedical Informatics, National Yang-Ming University, Taipei, Taiwan, China; Department of Computer Science and Information Engineering, National Taiwan University, Taipei, Taiwan, China; Armed Forces Peitou Hospital, Taipei, Taiwan, China; Institute for Information Industry, Taipei, Taiwan, China; Department of Life Science, Fu-Jen Catholic University, Taipei County, Taiwan, China; Department of Chemical Engineering, National Chung Cheng University, Chia-Yi County, Taiwan, China
POINeT funding source(s)
This research was supported by grants from NSC (Program for Interdisciplinary Research Project: NSC97-2627-B-010-011, NSC97-2627-B-030-001, NSC97-2627-B-194-001, NSC97-2627-B-002-005, NSC97-3112-B-010-025-CC1) and the Program for Promoting Academic Excellence of Universities (National Yang Ming University). This study is partly supported by the "Gene Diagnostic Service Model Research and Niche Market Analysis" project of the Institute of Information Industry, which is subsidized by the Ministry of Economy Affairs of the Republic of China.

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