PHMM specifications

Information


Unique identifier OMICS_23193
Name PHMM
Alternative name Poisson Hidden Markov Model
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data Some sequence of read counts.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Requirements GenomicFeatures, Rsamtools, GenomicRanges, depmixS4
Maintained Yes

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Maintainers


  • person_outline Pierre Bushel <>
  • person_outline Jun Lu <>
  • person_outline Jun Lu <>

PHMM article

PHMM institution(s)
Microarray and Genome Informatics Group, National Institute of Environmental Health Sciences, Research Triangle Park, NC, USA; SRA International, Inc., Research Triangle Park, NC, USA; Biostatistics Branch, National Institute of Environmental Health Sciences, Research Triangle Park, NC, USA
PHMM funding source(s)
Supported, in part by, the Intramural Research Program of the National Institutes of Health (NIH) and National Institute of Environmental Health Sciences (NIEHS) [Z01 ES102345-04].

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