PHMM specifications

Unique identifier:
OMICS_23193
Software type:
Application/Script
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Maintained:
Yes
Name:
Poisson Hidden Markov Model
Interface:
Command line interface
Input data:
Some sequence of read counts.
Programming languages:
R
Requirements:
GenomicFeatures, Rsamtools, GenomicRanges, depmixS4

versioning

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PHMM distribution

download

PHMM support

Maintainers

  • Pierre Bushel <>
  • Jun Lu <>
  • Jun Lu <>

forum

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Credits

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Publications

Institution(s)

Microarray and Genome Informatics Group, National Institute of Environmental Health Sciences, Research Triangle Park, NC, USA; SRA International, Inc., Research Triangle Park, NC, USA; Biostatistics Branch, National Institute of Environmental Health Sciences, Research Triangle Park, NC, USA

Funding source(s)

Supported, in part by, the Intramural Research Program of the National Institutes of Health (NIH) and National Institute of Environmental Health Sciences (NIEHS) [Z01 ES102345-04].

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