PolyA_SVM specifications

Information


Unique identifier OMICS_06160
Name PolyA_SVM
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Information


Unique identifier OMICS_06160
Name PolyA_SVM
Interface Web user interface
Restrictions to use None
Programming languages Perl
Computer skills Basic
Stability Stable
Maintained Yes

Publication for PolyA_SVM

PolyA_SVM citation

library_books

DeepSAGE Reveals Genetic Variants Associated with Alternative Polyadenylation and Expression of Coding and Non coding Transcripts

2013
PLoS Genet
PMCID: 3688553
PMID: 23818875
DOI: 10.1371/journal.pgen.1003594

[…] nd the overlap intervals tool in Galaxy (version 1.0.0).Intersection of SNPs with validated and predicted polyadenylation sites was performed using annotation in the PolyA-DB database (PolyA_DB 1 and PolyA_SVM) on UCSC (table browser tool). Detection of SNPs within polyadenylation signals was performed by extracting the strand specific sequence five nucleotide upstream and downstream each SNP (usi […]

PolyA_SVM institution(s)
Department of Mathematical Sciences, New Jersey Institute of Technology Newark, NJ, USA

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