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Polyadenylation site databases | RNA modification data analysis

Alternative polyadenylation (APA) is a widespread mechanism that contributes to the sophisticated dynamics of gene regulation. Approximately 50% of all protein-coding human genes harbor multiple polyadenylation (PA) sites; their selective and…
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plantAPA
Dataset

plantAPA

Provides a largest database of alternative polyadenylation (APA) in plants,…

Provides a largest database of alternative polyadenylation (APA) in plants, including rice, Arabidopsis, Medicago truncatula, and Chlamydomonas reinhardtii. PlantAPA is a database for query,…

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PolyA_DB
Dataset

PolyA_DB

Provides information regarding polyadenylation in several vertebrate species.…

Provides information regarding polyadenylation in several vertebrate species. PolyA_DB is a web resource which contains comprehensive information regarding polyadenylation, including poly(A) sites in…

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TC3A
Dataset

TC3A The Cancer 3′ UTR Atlas

Compiles information about Alternative polyadenylation (APA) usage in human…

Compiles information about Alternative polyadenylation (APA) usage in human cancers. TC3A contains a collection of APA events for more than 10 000 tumors across 32 cancer types. Users can download,…

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PACdb
Dataset

PACdb PolyA Cleavage site and 3'-UTR database

A web-accessible database that catalogs putative 3'-processing sites and…

A web-accessible database that catalogs putative 3'-processing sites and 3'-UTR sequences for multiple organisms. Sites have been identified primarily via expressed sequence tag-genome…

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Pomb(A)
Dataset

Pomb(A)

Polyadenylation Signal and Cleavage Site Database for S. pombe. Pomb(A) is a…

Polyadenylation Signal and Cleavage Site Database for S. pombe. Pomb(A) is a tool for the S. pombe community, especially for studies requiring identification of PAS and indication of conditional…

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APADB
Dataset

APADB

A database of vertebrate polyadenylation (PA) sites determined by 3' end…

A database of vertebrate polyadenylation (PA) sites determined by 3' end sequencing, using massive analysis of complementary DNA ends. APADB provides (A)PA sites for coding and non-coding…

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APASdb
Dataset

APASdb

A web-accessible database which can visualize the precise map and usage…

A web-accessible database which can visualize the precise map and usage quantification of different alternative polyadenylation (APA) isoforms for all genes. The datasets are deeply profiled by the…

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