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polyadq specifications

Information


Unique identifier OMICS_06162
Name polyadq
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Publication for polyadq

polyadq citations

 (17)
library_books

Antisense Oligonucleotide Mediated Terminal Intron Retention of the SMN2 Transcript

2018
PMCID: 5854547
DOI: 10.1016/j.omtn.2018.01.011

[…] of new regulatory mechanisms into the transcript that negatively impact on protein expression., in silico analysis of the extended 3′ utr was carried out using the online tools utrscan, mirbase, polyadq, and dna functional site miner (dna fs miner). lists the potential regulatory elements identified within intron 7 from each of these databases, and a illustrates the location […]

library_books

Detection of subclonal L1 transductions in colorectal cancer by long distance inverse PCR and Nanopore sequencing

2017
PMCID: 5673974
PMID: 29109480
DOI: 10.1038/s41598-017-15076-3

[…] either the 6th or the 9th polyadenylation signal instead of the canonical polyadenylation signal (fig. , supplementary table ). preference for the 9th polyadenylation signal is in agreement with polyadq prediction (supplementary table ), a web-based polyadenylation signal prediction tool. however, the 6th polyadenylation signal was defined as a false signal by polyadq, even though […]

library_books

Multiple Novel Nesprin 1 and Nesprin 2 Variants Act as Versatile Tissue Specific Intracellular Scaffolds

2012
PMCID: 3388047
PMID: 22768332
DOI: 10.1371/journal.pone.0040098

[…] codon. only those 3′utr sequences which already included a poly(a) tail or contained at least one poly(a) site downstream of the initial orf termination codon, as determined by scanning with the polyadq program or manually for non-canonical poly(a) signals, were considered for further study., table listing all potential utrs identified through available online databases., the majority […]

library_books

3D Profile Based Approach to Proteome Wide Discovery of Novel Human Chemokines

2012
PMCID: 3346806
PMID: 22586462
DOI: 10.1371/journal.pone.0036151

[…] analysed in detail for conservation across different species. in addition, we checked exon organization, chromosomal location and proximity to known chemokine genes, presence of a polya sites and polyadq, transcription factor binding sites of chemokine regulators and gene expression profiles. their protein sequences were analysed for glycosylation sites and subcellular localization (for […]

library_books

Alternative Polyadenylation and Nonsense Mediated Decay Coordinately Regulate the Human HFE mRNA Levels

2012
PMCID: 3329446
PMID: 22530027
DOI: 10.1371/journal.pone.0035461

[…] poly(a) signals (one aauaaa hexamer, two auuaaa hexamers, and one gauaaa hexamer) can be recognized for its 3′-end cleavage and polyadenylation. these results confirm those obtained when we used the polyadq program (http://rulai.cshl.org/tools/polyadq/polyadq_form.html) to evaluate potential poly(a) signals in the human hfe 3′ utr – this program predicted that the aauaaa and auuaaa sites […]

library_books

A Downstream CpG Island Controls Transcript Initiation and Elongation and the Methylation State of the Imprinted Airn Macro ncRNA Promoter

2012
PMCID: 3291542
PMID: 22396659
DOI: 10.1371/journal.pgen.1002540

[…] sites. second, the rt-qpcr data indicate that airn shortening on cgiδ alleles occurs within the first 570 bp, which does not contain a known polyadenylation site (http://rulai.cshl.edu/tools/polyadq/polyadq_form.html). cells with a paternal tdrδ allele showed similar occupancy of the initiating and elongating forms of rnapii to wildtype cells, except for the 3′ end of airn […]


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polyadq institution(s)
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA

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