polyaPeak statistics

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Associated diseases

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polyaPeak specifications

Information


Unique identifier OMICS_00456
Name polyaPeak
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for polyaPeak

polyaPeak in publications

 (2)
PMCID: 4947525
PMID: 27383781
DOI: 10.1038/nature18633

[…] based on peak summits given in the macs output. coordinates of genomic regions that lie at the end of chromosomes and/or in repeat regions were discarded from the final high-confidence peak lists. polyapeak was run in r to remove abnormally shaped peaks. peaks were assigned to genes using an in-house script according to whether they overlapped with a known tss or fell within 50 kb each side […]

PMCID: 3828144
PMID: 24244136
DOI: 10.1371/journal.pcbi.1003326

[…] region containing several sub-peaks. gps builds a probabilistic model of the distribution of chip-seq reads at given peak candidate regions to deconvolve nearby homotypic events. the r packages polyapeak and narrowpeaks can analyze the shape of the peaks to re-rank and narrow down the final peak list, respectively. these approaches are highly recommended as a post-processing step […]


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polyaPeak institution(s)
Department of Biostatistics and Bioinformatics, Emory University, Atlanta, GA, USA; Department of Biostatistics, Johns Hopkins University, Baltimore, MD, USA

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