polymapR pipeline

polymapR specifications

Information


Unique identifier OMICS_24785
Name polymapR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Output data A phased integrated map.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0, GNU General Public License version 2.0
Computer skills Advanced
Version 1.0.11
Stability Stable
Source code URL https://cran.r-project.org/src/contrib/polymapR_1.0.13.tar.gz
Maintained Yes

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Documentation


Maintainers


  • person_outline Roeland E. Voorrips <>
  • person_outline Peter Bourke <>
  • person_outline Chris Maliepaard <>

Publication for polymapR

polymapR IN pipeline

2009
PMCID: 2762536
PMID: 19434427
DOI: 10.1007/s00439-009-0677-y

[…] regulatory snps. mapper is a companion tool to the snpper retrieval system and database that locates computationally predicted transcription factor-binding sites (riva and kohane 2002). both polymapr (freimuth et al. 2005) and pupasnp finder (conde et al. 2006) use computational methods to find possible exon splicing enhancer sites that can then be mapped to snp locations to find snps […]

polymapR institution(s)
Plant Breeding, Wageningen University & Research, PB Wageningen, The Netherlands; Horticulture and Product Physiology, Wageningen University & Research, PB Wageningen, The Netherlands; Biometris, Wageningen University & Research, PB Wageningen, The Netherlands; Van Zanten Breeding B. V., EW, Rijsenhout, The Netherlands
polymapR funding source(s)
Supported through the TKI projects “A genetic analysis pipeline for polyploid crops” (project number BO-26.03-002- 001) and “Novel genetic and genomic tools for polyploid crops” (project number BO-26.03- 009-004).

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