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Polymutt

Alternative name: Polymutt2

Implement a likelihood-based framework for calling single nucleotide variants and detecting de novo point mutation events in families for next-generation sequencing data. In addition to facilitating detection and genotyping of SNPs, Polymutt can interface with existing tools to improve the accuracy of more challenging short insertion deletion polymorphisms and other types of variants. Polymutt should make studies of families even more attractive because, in addition to making it easy to study rare variants and de novo mutation events, family studies will now be able to better transform sequence data into accurate genotypes.

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Polymutt forum

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Polymutt classification

Polymutt specifications

Software type:
Package/Module
Restrictions to use:
None
Output data:
Variant calls
Operating system:
Unix/Linux
Version:
0.18
Maintained:
Yes
Interface:
Command line interface
Input format:
GLF
Output format:
VCF
Computer skills:
Advanced
Stability:
Stable

Polymutt distribution

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No versioning.

Polymutt support

Maintainer

  • Bingshan Li <>

Additional information

http://www.pitt.edu/~wec47/polymutt.html

Credits

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Publications

Institution(s)

Center for Human Genetics Research, Department of Physiology and Biophysics, Vanderbilt University, Nashville, TN, USA; Department of Pediatrics, Children's Hospital of Pittsburgh, Pittsburgh, PA, USA; Center for Statistical Genetics, Department of Biostatistics, School of Public Health, University of Michigan, Ann Arbor, MI, USA; Istituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche (CNR), Monserrato, Italy

Link to literature

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