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POLYPHEMUS

Integrates read-count signal intensity profiles with RNA Polymerase II binding site annotations to identify coding regions associated with potential transcriptional activity. Furthermore, POLYPHEMUS performs non-linear normalisation of multiple datasets prior to comparison, in order to correct for technical/experimental variations, which would otherwise complicate the interpretation of differences between compared samples and lead in extreme cases to false conclusions.

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POLYPHEMUS forum

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POLYPHEMUS classification

POLYPHEMUS specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
R
Version:
0.3.3
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Stability:
Stable

POLYPHEMUS distribution

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No versioning.

POLYPHEMUS support

Maintainer

  • Marco-Antonio Mendoza-Parra <>

Credits

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Publications

Institution(s)

Department of Cancer Biology, Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC)/CNRS/INSERM/Université de Strasbourg, Illkirch, France

Funding source(s)

This work was supported by the European Community (LSHC-CT-2005-518417 ‘EPITRON’ LSHM-CT-2005-018652 ‘CRESCENDO’, HEALTH-F4-2009-221952 ‘ATLAS’ and LSHG-CT-2005-018882 ‘X-TRA-NET’), the Institut National du Cancer (INCa), the Ligue National Contre le Cancer (laboratoire labelisé) and a fellowship of the Association de Recherche Contre le Cancer and the Fondation pour la Recherche Médicale (to M.W.).

Link to literature

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