POLYPHEMUS specifications

Information


Unique identifier OMICS_00468
Name POLYPHEMUS
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Version 0.3.3
Stability Stable
Maintained No

Versioning


No version available

Maintainer


This tool is not available anymore.

Publication for POLYPHEMUS

POLYPHEMUS citation

library_books

Practical Guidelines for the Comprehensive Analysis of ChIP seq Data

2013
PLoS Comput Biol
PMCID: 3828144
PMID: 24244136
DOI: 10.1371/journal.pcbi.1003326

[…] Binding Analysis”). A modified version of this non-linear normalization is implemented as MAnorm , assuming that peaks common in the two conditions do not undergo global changes. The R package called POLYPHEMUS has also been developed, implementing two normalization methods: (1) the non-linear method described in and (2) a Quantile normalization that makes the distribution in different samples t […]

POLYPHEMUS institution(s)
Department of Cancer Biology, Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC)/CNRS/INSERM/Université de Strasbourg, Illkirch, France
POLYPHEMUS funding source(s)
This work was supported by the European Community (LSHC-CT-2005-518417 ‘EPITRON’ LSHM-CT-2005-018652 ‘CRESCENDO’, HEALTH-F4-2009-221952 ‘ATLAS’ and LSHG-CT-2005-018882 ‘X-TRA-NET’), the Institut National du Cancer (INCa), the Ligue National Contre le Cancer (laboratoire labelisé) and a fellowship of the Association de Recherche Contre le Cancer and the Fondation pour la Recherche Médicale (to M.W.).

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