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POLYVIEW-2D specifications

Information


Unique identifier OMICS_05072
Name POLYVIEW-2D
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for POLYVIEW-2D

POLYVIEW-2D citations

 (3)
library_books

CoeViz: A Web Based Integrative Platform for Interactive Visualization of Large Similarity and Distance Matrices

2018
PMCID: 5798608
PMID: 29423399
DOI: 10.3390/data3010004

[…] ate of the three other visual components to reflect the change in focus. The CD also enables the external visualization of the residues displayed in the diagram using the POLYVIEW web-based platform: POLYVIEW-2D [], POLYVIEW-3D [], and Jmol []. The latter two options are available only when a protein 3D structure was used as an input for CoeViz analysis. The Jmol view enables the interactive analy […]

call_split

Recombinant human dihydroxyacetonephosphate acyl transferase characterization as an integral monotopic membrane protein

2016
Biochem Biophys Res Commun
PMCID: 5146282
PMID: 27836547
DOI: 10.1016/j.bbrc.2016.11.019
call_split See protocol

[…] d from the comparison of the following servers: HHpred, Quick2D , PredictProtein , Proteus 2.0 . The transmembrane (TM) helices/region prediction was performed by interrogating the following servers: POLYVIEW-2D (117–138) , TMAP (115–132, 168–196, 370–398, 565–580) , TMPRED (8–25, 165–194) , Octopus (510–560) . […]

call_split

Diversification and coevolution of the ghrelin/growth hormone secretagogue receptor system in vertebrates

2016
Ecol Evol
PMCID: 4797157
PMID: 27066235
DOI: 10.1002/ece3.2057
call_split See protocol

[…] a of the residue in the unfolded state. A RSA value of 0 means completely buried whereas a value of 9 is indicative of a fully exposed surface area. The predicted structures were visualized using the POLYVIEW‐2D viewer (Porollo et al. ). Correlations between RSA and other structural features of the protein, including α‐helix, β‐strand, and coil structures, were investigated; as were correlations b […]


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POLYVIEW-2D institution(s)
Children's Hospital Research Foundation, Cincinnati, OH, USA

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