POLYVIEW-3D statistics

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Citations per year

Number of citations per year for the bioinformatics software tool POLYVIEW-3D

Tool usage distribution map

This map represents all the scientific publications referring to POLYVIEW-3D per scientific context
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POLYVIEW-3D specifications


Unique identifier OMICS_05073
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline Aleksey Porollo

Publication for POLYVIEW-3D

POLYVIEW-3D citations


CoeViz: A Web Based Integrative Platform for Interactive Visualization of Large Similarity and Distance Matrices

PMCID: 5798608
PMID: 29423399
DOI: 10.3390/data3010004

[…] other visual components to reflect the change in focus. The CD also enables the external visualization of the residues displayed in the diagram using the POLYVIEW web-based platform: POLYVIEW-2D [], POLYVIEW-3D [], and Jmol []. The latter two options are available only when a protein 3D structure was used as an input for CoeViz analysis. The Jmol view enables the interactive analysis of the struc […]


Hamp1 but not Hamp2 regulates ferroportin in fish with two functionally distinct hepcidin types

Sci Rep
PMCID: 5665920
PMID: 29093559
DOI: 10.1038/s41598-017-14933-5

[…] /) to check and validate protein structures. 97.95% of the residues were found to be in the most favored and allowed regions of the Ramachandran plot. Molecular graphic images were obtained using the Polyview-3D webserver (http://polyview.cchmc.org/polyview3d.html). […]


In Silico Prediction and Experimental Confirmation of HA Residues Conferring Enhanced Human Receptor Specificity of H5N1 Influenza A Viruses

Sci Rep
PMCID: 4473683
PMID: 26091504
DOI: 10.1038/srep11434
call_split See protocol

[…] The structural model of the H5 HA molecule of KAN-1 was constructed using SWISS-MODEL and POLYVIEW-3D and is based on homology modeling using the crystal structure of the H5-HA protein of A/Vietnam/1203/2004 (PDB ID: 2FK0.1) as a template. H5 numbering was based on the mature protein (Gene […]


Prediction of B Cell Epitopes in Listeriolysin O, a Cholesterol Dependent Cytolysin Secreted by Listeria monocytogenes

Adv Bioinformatics
PMCID: 3909977
PMID: 24523732
DOI: 10.1155/2014/871676

[…] s 60–525 of LLO were used to predict a three-dimensional model since these residues correspond to amino acids 32–242 and 245–499 in SLY. Molecular models were prepared in different orientations using POLYVIEW 3D (http://polyview.cchmc.org/polyview3d.html) []. […]


A molecular model of the full length human NOD like receptor family CARD domain containing 5 (NLRC5) protein

BMC Bioinformatics
PMCID: 3848420
PMID: 24044430
DOI: 10.1186/1471-2105-14-275
call_split See protocol

[…] ions and molecular visualizations of the structural models were performed using the Sybyl program package run on Silicon Graphics Fuel workstations (Silicon Graphics International, Fremont, CA, USA). POLYVIEW-3D (available at: http://polyview.cchmc.org/polyview3d.html) was used to prepare surface representation []. […]


Phylogenetic Analysis of Glucosyltransferases and Implications for the Coevolution of Mutans Streptococci with Their Mammalian Hosts

PLoS One
PMCID: 3572963
PMID: 23457545
DOI: 10.1371/journal.pone.0056305

[…] t with Swiss-Model , based on the crystal structure of the catalytic domain of S. mutans Gtf-SI from strain MT8148 (Protein Databank accession code 3AIE; ). The resulting structures were viewed with Polyview-3D . […]

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POLYVIEW-3D institution(s)
Department of Environmental Health, University of Cincinnati, Cincinnati, OH, USA

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