POODLE-I statistics

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Protocols

POODLE-I specifications

Information


Unique identifier OMICS_03627
Name POODLE-I
Alternative name POODLE Integration
Interface Web user interface
Restrictions to use None
Programming languages C++, Java, Perl
Computer skills Basic
Stability No
Maintained No

Publication for POODLE Integration

POODLE-I citations

 (3)
call_split

An Overview of Predictors for Intrinsically Disordered Proteins over 2010–2014

2015
Int J Mol Sci
PMCID: 4632708
PMID: 26426014
DOI: 10.3390/ijms161023446
call_split See protocol

[…] s trained by eight-fold cross-validation. The analysis of accuracy indicates that PONDR-FIT improves the prediction accuracy with an average of 11% while compared to each of the six single predictors.POODLE-I is a predictor based on the meta-approach []. It is a workflow system to predict disordered regions from the results of the series of POODLE programs. One of the advantages of POODLE-I over t […]

library_books

Intrinsically disordered regions of nucleophosmin/B23 regulate its RNA binding activity through their inter and intra molecular association

2013
Nucleic Acids Res
PMCID: 3902904
PMID: 24106084
DOI: 10.1093/nar/gkt897

[…] that the central acidic and basic regions are IDRs and contribute to regulate the RNA binding activity of the structured RNA binding domain, CTD. Computational prediction of the disordered status by POODLE-I (http://mbs.cbrc.jp/poodle/poodle-i.html) () showed that the central region of B23 is IDR (A). To confirm this prediction, we performed CD spectrum analyses with His-tagged B23.1-ΔC3 harborin […]

library_books

Proteomic analysis of sea urchin (Strongylocentrotus purpuratus) spicule matrix

2010
Proteome Sci
PMCID: 2909932
PMID: 20565753
DOI: 10.1186/1477-5956-8-33

[…] pean Bioinformatics Institute (EBI, http://www.ebi.ac.uk) searching against UniProt Knowledgebase and UniProtKB/Swiss-Prot protein sequence databases. Disordered protein structure was predicted using POODLE-I http://mbs.cbrc.jp/poodle/poodle-i.html[] and subcellular localizations were predicted with Sherloc2 http://www-bs.informatik.uni-tuebingen.de/Services/SherLoc2[]. Secretion signal sequences […]


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POODLE-I institution(s)
Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology, Tokyo, Japan

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