Pool sequencing data analysis bioinformatics software tools

Whole-genome sequencing of pools of individuals (Pool-seq) provides a cost-effective alternative to sequencing individuals separately. With the availability of custom-tailored software tools, Pool-seq is being increasingly used for population genomic research on both model and…

Pool-seq analysis steps

Pool sequencing data analysis bioinformatics software tools

Most Recent Tools

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ClonoCalc
Desktop

ClonoCalc

Prepares the raw data for downstream analyses. ClonoCalc combines a…

Prepares the raw data for downstream analyses. ClonoCalc combines a demultiplexer for barcode splitting and employs MiXCR for paired-end read merging and the extraction of human and animal T cell…

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aBayesQR
Desktop

aBayesQR

Employs a maximum-likelihood framework to infer individual sequences in a…

Employs a maximum-likelihood framework to infer individual sequences in a mixture from high-throughput sequencing data. aBayesQR is an algorithm performs reconstruction of a quasispecies from…

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ASAP
Web

ASAP Automated Single-cell Analysis Pipeline

Aims at the complete analysis of scRNA-seq data post genome alignment: from the…

Aims at the complete analysis of scRNA-seq data post genome alignment: from the parsing, filtering, and normalization of the input count data files, to the visual representation of the data,…

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GWAlpha
Desktop

GWAlpha

Provides a parametric estimation of genetic effect, enabling straightforward…

Provides a parametric estimation of genetic effect, enabling straightforward comparison across populations or phenotypes. It provides a middle ground between costly individual-based Genome-Wide…

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