Pool sequencing data analysis bioinformatics software tools

Pool-seq analysis steps

Whole-genome sequencing of pools of individuals (Pool-seq) provides a cost-effective alternative to sequencing individuals separately. With the availability of custom-tailored software tools, Pool-seq is being increasingly used for population genomic research on both model and…

Pool sequencing data analysis bioinformatics software tools

Most Recent Tools

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ClonoCalc
Desktop

ClonoCalc

Prepares the raw data for downstream analyses. ClonoCalc combines a…

Prepares the raw data for downstream analyses. ClonoCalc combines a demultiplexer for barcode splitting and employs MiXCR for paired-end read merging and the extraction of human and animal T cell…

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aBayesQR
Desktop

aBayesQR

Employs a maximum-likelihood framework to infer individual sequences in a…

Employs a maximum-likelihood framework to infer individual sequences in a mixture from high-throughput sequencing data. aBayesQR is an algorithm performs reconstruction of a quasispecies from…

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GWAlpha
Desktop

GWAlpha

Provides a parametric estimation of genetic effect, enabling straightforward…

Provides a parametric estimation of genetic effect, enabling straightforward comparison across populations or phenotypes. It provides a middle ground between costly individual-based Genome-Wide…

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SIMPLE
Desktop

SIMPLE SImple Mapping PipeLinE

Simplifies the process of mapping new mutations. SIMPLE uses next generation…

Simplifies the process of mapping new mutations. SIMPLE uses next generation sequencing fastq files to generate tables and plots to show the most likely candidate gene and our locations, with ease…

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