Pool sequencing data analysis bioinformatics software tools

Pool-seq analysis steps

Whole-genome sequencing of pools of individuals (Pool-seq) provides a cost-effective alternative to sequencing individuals separately. With the availability of custom-tailored software tools, Pool-seq is being increasingly used for population genomic research on both model and…

Pool sequencing data analysis bioinformatics software tools

Most Recent Tools

Web app
G T A T C G C T A Genetic Map Comparator Genetic Map Comparator

Genetic Map Comparator

Allows users to select a subset of chromosomes, zoom on loci, hover over…

Allows users to select a subset of chromosomes, zoom on loci, hover over interesting markers to get their names, and perform inter-chromosomal analyses to detect markers assigned to very different…

Desktop app
G T A T C G C T A GWAlpha GWAlpha

GWAlpha

Provides a parametric estimation of genetic effect, enabling straightforward…

Provides a parametric estimation of genetic effect, enabling straightforward comparison across populations or phenotypes. It provides a middle ground between costly individual-based Genome-Wide…

Desktop app
G T A T C G C T A SImple Mapping… SImple Mapping PipeLinE

SIMPLE SImple Mapping PipeLinE

Simplifies the process of mapping new mutations. SIMPLE uses next generation…

Simplifies the process of mapping new mutations. SIMPLE uses next generation sequencing fastq files to generate tables and plots to show the most likely candidate gene and our locations, with ease…

Desktop app
G T A T C G C T A Strain Aware VirAl… Strain Aware VirAl GEnome assembly

SAVAGE Strain Aware VirAl GEnome assembly

A computational tool that allows for reference-free assembly of viral…

A computational tool that allows for reference-free assembly of viral quasispecies from sequencing data sets of truly deep coverage. SAVAGE makes relevant contributions for (i) the construction of…

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