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Pool-seq software tools

High-throughput sequencing software tools

Pool-seq applications

Demultiplexing

8 tools

SNP detection

19 tools

Indel detection

7 tools

Transposon detection

2 tools

Population genetic analysis

8 tools

Haplotype frequency estimation

5 tools

Genetic mapping

6 tools

Viral population reconstruction

16 tools

Unclassified tools

4 tools

Whole-genome sequencing of pools of individuals (Pool-seq) provides a cost-effective alternative to sequencing individuals separately. With the availability of custom-tailored software tools, Pool-seq is being increasingly used for population genomic research on both model and non-model organisms. Source text: Schlotterer et al., 2014.