PoPoolation TE statistics

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Citations per year

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Associated diseases

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PoPoolation TE specifications

Information


Unique identifier OMICS_00119
Name PoPoolation TE
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License BSD 2-clause “Simplified” License
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Publication for PoPoolation TE

PoPoolation TE in publications

 (2)
PMCID: 4505896
PMID: 26186437
DOI: 10.1371/journal.pgen.1005406

[…] for d. simulans ( and tables). this yields an average coverage of 381 in d. melanogaster and of 327 in d. simulans., one of the requirements for estimating the abundance of te insertions with popoolation te [] is a reliable te data base. a manually curated high-quality annotation of te insertions has been generated for d. melanogaster [, ], whereas, to our knowledge, so far no te […]

PMCID: 4154752
PMID: 25188499
DOI: 10.1371/journal.pone.0106689

[…] to the study of genome evolution, as repeats affect genome size structure, as well as genome function , , –. several tools (e.g. t-lex2 , retroseq , tea , ngs_te_mapper , relocate , retroseq , popoolation te , te-locate ) are currently available for discovery and annotation of te sequences in high-throughput sequencing data. however, because these tools depend on the quality […]


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PoPoolation TE institution(s)
Institut für Populationsgenetik, Vetmeduni Vienna, Wien, Austria

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