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PoPoolation TE specifications
Information
| Unique identifier | OMICS_00119 |
|---|---|
| Name | PoPoolation TE |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux |
| License | BSD 2-clause “Simplified” License |
| Computer skills | Advanced |
| Stability | Stable |
| Maintained | Yes |
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Publication for PoPoolation TE
PoPoolation TE in publications
(2)[…] for d. simulans ( and tables). this yields an average coverage of 381 in d. melanogaster and of 327 in d. simulans., one of the requirements for estimating the abundance of te insertions with popoolation te [] is a reliable te data base. a manually curated high-quality annotation of te insertions has been generated for d. melanogaster [, ], whereas, to our knowledge, so far no te […]
Illumina TruSeq Synthetic Long Reads Empower De Novo Assembly and Resolve Complex, Highly Repetitive Transposable Elements
[…] to the study of genome evolution, as repeats affect genome size structure, as well as genome function , , –. several tools (e.g. t-lex2 , retroseq , tea , ngs_te_mapper , relocate , retroseq , popoolation te , te-locate ) are currently available for discovery and annotation of te sequences in high-throughput sequencing data. however, because these tools depend on the quality […]
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