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|Interface||Web user interface|
|Restrictions to use||None|
|Input data||A protein structure.|
Publication for POPSCOMP
Inhibitor induced HER2 HER3 heterodimerisation promotes proliferation through a novel dimer interface
[…] 3 into the spaces between atoms.The structural alignment was performed using the multi-seq tool of the VMD 1.9.1 package (), and measurement of interaction surface buried residues was performed using POPScomp (). […]
Design and application of implicit solvent models in biomolecular simulations
[…] ximations. An overview of the analysis of protein geometry can be found in Gerstein and Richards . Fast methods for the SASA computation of proteins and nucleic acids are implemented in POPS  and POPSCOMP , a related application for the SASA analysis of biomolecular complexes. Instead of a SASA term, solely the volume of neighbour groups can be used as a measure of desolvation, as in the EEF […]
Structure and Stability Insights into Tumour Suppressor p53 Evolutionary Related Proteins
[…] surface areas (SASA) were computed using the POPS software [,] and interface residues were determined as the residues that show a 10% reduced SASA compared to the fully exposed state calculated with POPSCOMP . The probability of an amino acid involved in an interface is given by p = (number of occurrences of amino acids located at an interface / number of instances of the amino acids). […]
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