Population genome analysis software tools and databases

Population genomics steps

Genetic diversity is the amount of variation observed between DNA sequences from distinct individuals of a given species. This pivotal concept of population genetics has implications for species health, domestication, management and conservation. Levels of genetic diversity seem…

Population genome analysis software tools and databases

Most Recent Tools

Desktop app
SitePainter SitePainter

SitePainter

Allows investigators to create or upload pictures of their study site, loads…

Allows investigators to create or upload pictures of their study site, loads diversity analyses data and displays both diversity and taxonomy results in a spatial context. SitePainter includes:…

Desktop app
GBIF Integrated… GBIF Integrated Publishing Toolkit

GBIF Integrated Publishing Toolkit

Provides functions to i) encode existing species occurrence datasets and…

Provides functions to i) encode existing species occurrence datasets and checklists, such as records from natural history collections or observations, in the Darwin Core standard to enhance…

Desktop app
RENT+ RENT+

RENT+

Reconstructs local tree topologies for a set of population single-nucleotide…

Reconstructs local tree topologies for a set of population single-nucleotide polymorphism (SNP) haplotypes undergoing recombination. Due to recombination, tree topologies change as one moves accross…

Desktop app
Spectral… Spectral representation of Transition Density…

SpectralTDF Spectral representation of Transition Density Functions

Computes the transition density function (TDF) of the diffusion approximation…

Computes the transition density function (TDF) of the diffusion approximation of the Wright-Fisher process with general diploid selection and recurrent mutation. SpectralTDF program allows for…

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