Programs for population study data analysis.

Population studies (DNA-seq analysis)

Most Recent Tools

Desktop app
G T A T C G C T A Prest-plus Prest-plus

Prest-plus

Detects pedigree errors, cryptic relatedness and relationship mispecification…

Detects pedigree errors, cryptic relatedness and relationship mispecification in GWAS or linkage data. Using an optimized MLE estimator for IBD probabilities, prest-plus computes accurate estimates…

Desktop app
G T A T C G C T A RELPAIR RELPAIR

RELPAIR

A likelihood-based method to infer the most likely relationship of a pair of…

A likelihood-based method to infer the most likely relationship of a pair of putative sibs. RELPER consider all possible pairs of individuals in the sample, to test for additional relationships, to…

Desktop app
G T A T C G C T A ClAssification of… ClAssification of Relationships with ROTations

CARROT ClAssification of Relationships with ROTations

A framework for relationship inference that leverages linkage information to…

A framework for relationship inference that leverages linkage information to differentiate between rotated relationships. CARROT uses a novel heuristic to decide whether one of the two individuals…

Desktop app
G T A T C G C T A FRANz FRANz

FRANz

A package for pedigree reconstruction in natural populations using co-dominant…

A package for pedigree reconstruction in natural populations using co-dominant genomic markers such as microsatellites and single nucleotide polymorphisms (SNPs). FRANz makes use of prior information…

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