poreminion statistics

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poreminion specifications

Information


Unique identifier OMICS_09061
Name poreminion
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Oxford Nanopore
Operating system Unix/Linux
Programming languages Python
License MIT License
Computer skills Advanced
Version 0.4.4
Stability Stable
Requirements
edgeR, python, h5py, poretools, matplotlib 1.4.0, poreminion 0.4.4, bliss, pandas 0.14.1
Maintained Yes

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Documentation


Maintainers


  • person_outline John M. Urban <>
  • person_outline Susan A. Gerbi <>

Publication for poreminion

poreminion in publication

PMCID: 5816649
PMID: 29453452
DOI: 10.1038/s41598-018-21484-w

[…] 1.4–1.7)., we used metrichor 2.42.2 to basecall our 1d and 2d data. poretools 0.6.0 was used to convert fast5 files from metrichor into fastq files for mapping. statistics were also collected using poreminion 0.4.4 and fast5tools 0.1. we compared metrichor with the newest ont-released basecaller, albacore 1.2.4, which is available on github., reads were mapped using the basecaller bwa […]


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poreminion institution(s)
BioMed Division (MCB Department), Brown University, Providence, RI, USA; Division of Applied Mathematics, Brown University, Providence, RI, USA; Center for Computational Molecular Biology, Brown University, Providence, RI, USA
poreminion funding source(s)
Supported by NSF GRFP (DGE-1058262) and NSF EPSCoR (grant# 1004057).

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