PoreSeq

School of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts, USA; Department of Physics, Harvard University, Cambridge, Massachusetts, USA

• (Szalay and Golovchenko, 2015) De novo sequencing and variant calling with nanopores using PoreSeq. Nature biotechnology.
  PMID: 26352647

• (Magoc et al., 2013) GAGE-B: an evaluation of genome assemblers for bacterial organisms. Bioinformatics.
  PMID: 23665771
• (Miller et al., 2010) Assembly algorithms for next-generation sequencing data. Genomics.
  PMID: 20211242
• (Narzisi and Mishra, 2011) Comparing de novo genome assembly: the long and short of it. PloS one.
  PMID: 21559467
• (Henson et al., 2012) Next-generation sequencing and large genome assemblies. Pharmacogenomics.
  PMID: 22676195
• (Kleftogiannis et al., 2013) Comparing memory-efficient genome assemblers on stand-alone and cloud infrastructures. PloS one.
  PMID: 24086547
• (Nagarajan and Pop, 2013) Sequence assembly demystified. Nature reviews Genetics.
  PMID: 23358380
• (Bradnam et al., 2013) Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. GigaScience.
  PMID: 23870653
• (Salzberg et al., 2012) GAGE: A critical evaluation of genome assemblies and assembly algorithms. Genome research.
  PMID: 22147368
• (Utturkar et al., 2014) Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences. Bioinformatics.
  PMID: 24930142
• (Alkan et al., 2011) Limitations of next-generation genome sequence assembly. Nature methods.
  PMID: 21102452
• (Love et al., 2016) Evaluation of DISCOVAR de novo using a mosquito sample for cost-effective short-read genome assembly. BMC genomics.
  PMID: 26944054