poretools specifications

Information


Unique identifier OMICS_07584
Name poretools
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input format FAST5
Output format FASTQ/FASTA
Biological technology Oxford Nanopore
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Requirements HDF5, R, rpy, h5py
Maintained Yes

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Documentation


poretools article

poretools institution(s)
Institute of Microbiology and Infection, University of Birmingham, Birmingham, UK; Department of Public Health Sciences, University of Virginia, Charlottesville, VA, USA

poretools review

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senaj

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Desktop
Poretools is relatively easy to use those with command-line experience. This software produces easy to understand summary plots of MinION data. The output is more intuitive that the output from Oxford Nanopore's MinKnow software.