poretools specifications

Unique identifier:
OMICS_07584
Interface:
Command line interface
Input format:
FAST5
Biological technology:
Oxford Nanopore
Programming languages:
Python
Stability:
Stable
Maintained:
Yes
Software type:
Pipeline/Workflow
Restrictions to use:
None
Output format:
FASTQ/FASTA
Operating system:
Unix/Linux
Computer skills:
Advanced
Requirements:
HDF5, R, rpy, h5py

versioning

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poretools distribution

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poretools support

Documentation

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Credits

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Publications

Institution(s)

Institute of Microbiology and Infection, University of Birmingham, Birmingham, UK; Department of Public Health Sciences, University of Virginia, Charlottesville, VA, USA

User review

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1 user review

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senaj

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Poretools is relatively easy to use those with command-line experience. This software produces easy to understand summary plots of MinION data. The output is more intuitive that the output from Oxford Nanopore's MinKnow software.

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