PORT specifications

Information


Unique identifier OMICS_20225
Name PORT
Alternative name Pipeline of RNA-Seq Transformations
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Some raw sequences reads, alignment files, a gene information file and a genome file.
Input format SAM,BAM,FASTA,FASTQ
Output data A normalized file for exonmappers, intronmappers, intergenicmappers and exon inconsistent, a normalized file for genemappers, some feature count spreadsheets, normalization factor statistics and normalized coverage and junction files.
Output format SAM,BAM
Operating system Unix/Linux
Programming languages Perl, Python
Computer skills Advanced
Version 0.8.5
Stability Stable
Maintained Yes

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Documentation


Additional information


https://github.com/itmat/normalization/wiki

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