Portcullis specifications


Unique identifier OMICS_23716
Name Portcullis
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Some BAM files and a genome.
Input format BAM+FASTA
Output data A set of filtered SJs.
Operating system Unix/Linux
Programming languages C++, Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
GCC, make, libtool, zlib, pthreads, Boost, samtools, numpy, scipy, matplotlib, sklearn, Sphinx-doc
Maintained Yes



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  • person_outline Daniel Mapleson <>

Publication for Portcullis

Portcullis institution(s)
Earlham Institute, Norwich Research Park, UK
Portcullis funding source(s)
Supported by the BBSRC, Institute Strategic Programme Grant BB/J004669/1.

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