PowerCore protocols

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PowerCore specifications

Information


Unique identifier OMICS_20078
Name PowerCore
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Windows
Programming languages C#
Computer skills Advanced
Stability No
Maintained No

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Publication for PowerCore

PowerCore in pipelines

 (2)
2017
PMCID: 5653812
PMID: 29062029
DOI: 10.1038/s41598-017-13219-0

[…] the efficiency of allele sampling using molecular data. for phenotypic data consisting of continuous variables, 100% of the diversity can be sampled based on the precision of classification using powercore software. from the two comprehensive sets of results, a core set available for future association mapping was constructed. simple t-tests were performed for all phenotypic data […]

2012
PMCID: 3574832
PMID: 23153260
DOI: 10.1186/1471-2156-13-102

[…] 4.1 []. polymorphism information content (pic) was calculated using powermarker version 3.25 []., on the basis of the phenotype and molecular marker data, a mc was extracted from the cc using powercore software [], which can represent all the alleles identified by the molecular markers and classes of the phenotypic observations. the software applies an advanced maximization strategy […]


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PowerCore in publications

 (29)
PMCID: 5653812
PMID: 29062029
DOI: 10.1038/s41598-017-13219-0

[…] analysis in the future, a sampling size of 300 was set. in addition, 10 phenotypic traits, including h, dbh, t, v, p, wbd, hy, l, d and l/d, were used to construct the core germplasm using powercore, which resulted in the identification of 26 individuals exhibiting 100% of the diversity of the whole collection. finally, a core germplasm of 300 individuals (52 from gx, 34 from jx, 20 […]

PMCID: 5651524
PMID: 29093721
DOI: 10.3389/fpls.2017.01748

[…] et al., ), core hunter (thachuk et al., ; beukelaer et al., ) and principal component scoring (noirot et al., ); and the distance-based methods, such as core hunter, mlst (perrier et al., ), and powercore (kim et al., ). the choice of appropriate method depends on several criteria, including the purpose of the study (e.g., to capture most variation as much as possible in small accessions […]

PMCID: 5595878
PMID: 28900126
DOI: 10.1038/s41598-017-10508-6

[…] of the total number of cells in each well was obtained. cell death was quantified by the automated measure of the draq7 signals at 0 and 24 h time points using metaxpress 5.3.0.5 and metaxpress powercore 1.3.0.3 software (molecular devices, usa)., reverse phase protein array (rppa) assays were performed as described previously, with minor modifications. protein lysates were prepared […]

PMCID: 5583601
PMID: 28912793
DOI: 10.3389/fpls.2017.01500

[…] pairwise fst and the principal component analysis (pcoa) to characterize the subgroups of the germplasm set was computed using genalex 6.5 software ()., a mini-core collection was developed using powercore v1.0 software (). for both core and mini-core collections, nei genetic diversity index and shannon–weaver diversity index was calculated. the significant difference percentage between core […]

PMCID: 5526916
PMID: 28798757
DOI: 10.3389/fpls.2017.01296

[…] for each sampling size and the core subset having the highest shannon's diversity (lewontin, ) was chosen. the second approach was to use the advanced maximization (m) strategy as implemented in powercore v1.0 (kim et al., ) in order to select the accessions representing the total (100%) coverage of alleles and trait states present in the entire collection., the molecular diversity retained […]


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PowerCore institution(s)
National Institute of Agricultural Biotechnology, Suwon, Korea; Qubesoft,R/No, Dongyoung Central B/D, Gunpo, Korea; Bioversity International, APO Office, Serdang, Malaysia
PowerCore funding source(s)
Supported by the National Institute of Agricultural Biotechnology (#NIAB 05-6-11-30-2), the Bio-Green 21 program (Grant code # 20050401034738) of the Rural Development Administration (RDA) and Agricultural Research and Development Promotion Center (ARPC), Korea.

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