PowerMarker specifications

Information


Unique identifier OMICS_20490
Name PowerMarker
Interface Web user interface
Restrictions to use None
Programming languages C#, C++
Computer skills Basic
Stability Stable
Maintained No

Maintainer


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PowerMarker article

PowerMarker citations

 (3)
2016
PMCID: 4930185

[…] (fst) for the inferred subpopulations were performed using arlequin v3.11 [41]. a neighbor-joining (nj) phylogenetic tree was constructed based on the nei’s genetic distances matrix [37, 42] using powermarker v3.25 [37]. genotypic similarity among 146 accessions was evaluated by flapjack (downloaded from https://ics.hutton.ac.uk/flapjack/), which was previously described by milne et al. (2010) […]

2011
PMCID: 3247246

[…] parameter r2 (r2≥0.1) was used to estimate ld between all snps with less than 20% missing data on each chromosome via the software plink [59]. the alleles for all snps were calculated using powermarker 3.25 [60]. the population structure and kinship information for 277 lines were estimated with a mixed linear model using the software structure version 2.3 [61] and spagedi [62] with 5000 […]

2009
PMCID: 2719641

[…] phylogenetic trees were constructed using several different functions (i.e. shared allele, log shared allele, euclidean, reynolds 1983, nei 1973, nei 1983, goldstein 1995, shriver 1995) within the powermarker program [24]. bootstrapping was carried out using the bootstrap function in powermarker and consensus trees were created using the consense program found the phylip software package v3.68 […]

PowerMarker institution(s)
Bioinformatics Research Center, Campus Box 7566, North Carolina State University, Raleigh, NC, USA
PowerMarker funding source(s)
Partly supported by NSF grants DBI-0096033 and DEB-9996118.

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