PowerMarker protocols

PowerMarker specifications

Information


Unique identifier OMICS_20490
Name PowerMarker
Interface Web user interface
Restrictions to use None
Programming languages C#, C++
Computer skills Basic
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Publication for PowerMarker

PowerMarker IN pipelines

 (5)
2017
PMCID: 5653812
PMID: 29062029
DOI: 10.1038/s41598-017-13219-0

[…] the bar plot of the probability of membership from the results of q-matrix and to evaluate modality., a core collection was constructed. the optimal sampling method and amount were determined using powermarker v. 3.2554 based on m and random sampling strategies. the m strategy is also known as the maximum number of alleles strategy66,67. the random sampling strategy […]

2015
PMCID: 4678371
PMID: 26666506
DOI: 10.1038/srep18213

[…] traits under heat stress and nei’s genetic distances genetic distance matrix obtained with molecular markers was performed using the mantel test. all analyses were conducted using powermarker v3.2526., three consensus trees were reconstructed by the phylip program27 and draw by figtree ver.1.4.0 (a graphical viewer of phylogenetic trees and as a program for producing […]

2015
PMCID: 4681178
PMID: 26673149
DOI: 10.1186/s12864-015-2245-2

[…] software [42] and then generated as a q-matrix for further association mapping. a neighbor-joining (nj) tree was constructed based on nei’s genetic distance [43] between pairwise individuals under powermarker version 3.25 [39]. furthermore, according to the nei’s genetic distance matrix, a principal component analysis (pca) was performed using ntsyspc version 2.1 [44]. finally, the pairwise […]

2010
PMCID: 2815792
PMID: 20140262
DOI: 10.1371/journal.pone.0009040

[…] the whole-genome association study pipeline (wasp) developed at the center for human genetics research of vanderbilt university (http://chgr.mc.vanderbilt.edu/wasp/) and powermarker software programs [39]. statistical significance for these analyses was determined using chi-square tests or fisher's exact tests (if there were less than five individuals for any allele […]

2009
PMCID: 2719641
PMID: 19594938
DOI: 10.1186/1471-2229-9-88

[…] phylogenetic trees were constructed using several different functions (i.e. shared allele, log shared allele, euclidean, reynolds 1983, nei 1973, nei 1983, goldstein 1995, shriver 1995) within the powermarker program [24]. bootstrapping was carried out using the bootstrap function in powermarker and consensus trees were created using the consense program found the phylip software package v3.68 […]

PowerMarker institution(s)
Bioinformatics Research Center, Campus Box 7566, North Carolina State University, Raleigh, NC, USA
PowerMarker funding source(s)
Partly supported by NSF grants DBI-0096033 and DEB-9996118.

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