powsimR specifications

Information


Unique identifier OMICS_16839
Name powsimR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data RNA-seq gene expression read counts.
Operating system Unix/Linux, Mac OS
Programming languages R
Computer skills Advanced
Version 1.1.3
Stability Stable
Requirements
dplyr, ggplot2, mclust, fastICA, MAST, broom, drimpute, ggextra, powsimr, decent
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainer


  • person_outline Beate Vieth

Publication for powsimR

powsimR citation

library_books

Quartz Seq2: a high throughput single cell RNA sequencing method that effectively uses limited sequence reads

2018
Genome Biol
PMCID: 5845169
PMID: 29523163
DOI: 10.1186/s13059-018-1407-3

[…] PowsimR was used to perform power analysis []. The parameters of the negative binomial distribution, namely, mean, dispersion, and dropout probability, were estimated by the function estimateParam wit […]

powsimR institution(s)
Anthropology & Human Genomics, Department of Biology II, Ludwig-Maximilians University, Munich, Germany

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