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Associated diseases

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pPAP specifications

Information


Unique identifier OMICS_16647
Name pPAP
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Ruby
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements
BioRuby, mafft, hmmer
Maintained Yes

Versioning


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Maintainer


  • person_outline Susumu Goto <>

Publication for pPAP

pPAP in publication

PMCID: 5870536
PMID: 28334262
DOI: 10.1093/bioinformatics/btx112

[…] and functional alteration. currently, there is no computational method available for the functional prediction of type iii pkss., results: we developed a plant type iii pks reaction predictor, ppap, based on the recently proposed classification of type iii pkss. ppap combines two kinds of similarity measures: one calculated by profile hidden markov models (phmms) built from functionally […]


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pPAP institution(s)
Bioinformatics Center, Institute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto, Japan
pPAP funding source(s)
Supported in part by JSPS KAKENHI (Grant number 26280105).

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