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PPI finder specifications

Information


Unique identifier OMICS_09844
Name PPI finder
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Taxon


  • Primates
    • Homo sapiens

Maintainer


This tool is not available anymore.

Publication for PPI finder

PPI finder citations

 (4)
library_books

Bioinformatics analysis of the proteins interacting with LASP 1 and their association with HBV related hepatocellular carcinoma

2017
Sci Rep
PMCID: 5339786
PMID: 28266596
DOI: 10.1038/srep44017

[…] roteins that interact with LASP-1, the information of target human proteins was retrieved from different public databases, including IntAct, BioGRID, APID, PINA2.0, Mentha, HitPredict, WiKi-Pi, PIPs, PPI-finder and PrePPI or from the studies reported in PubMed. A total of 390 predicted or experimentally validated LASP-1 interacting proteins were obtained. Given that predicated LASP-1 interactions […]

library_books

Class III myosins shape the auditory hair bundles by limiting microvilli and stereocilia growth

2016
PMCID: 4738386
PMID: 26754646
DOI: 10.1083/jcb.201509017

[…] less uniform than in control hair cells (, middle and right). We extended our analysis to two additional potential binding partners of myosin IIIa in cochlear hair bundles: coronin-1a (found with the PPI Finder tool; ), an actin-binding protein that promotes the cofilin-mediated severing of actin filaments (), and espin-like, an espin paralogue similar in structure to espin-1 (; ). Both coronin-1 […]

library_books

Novel semantic similarity measure improves an integrative approach to predicting gene functional associations

2013
BMC Syst Biol
PMCID: 3663825
PMID: 23497449
DOI: 10.1186/1752-0509-7-22

[…] nd unrestricted datasets can be large enough but inaccurate and noisy (increases the possibility of generating false positives).GAP is also different from the unsupervised tools such as PIP, I2D, and PPI-Finder as GAP is designed to extract semantic similarities by developing a taxonomy-based scoring measure, and by using leading semantic search engines to extract association information from the […]

library_books

Literature Retrieval and Mining in Bioinformatics: State of the Art and Challenges

2012
Adv Bioinformatics
PMCID: 3388278
PMID: 22778730
DOI: 10.1155/2012/573846

[…] t entities and events (ii) developing a set of templates or outlines of the kinds of relevant information, and (iii) developing patterns aimed at deciding how to slot items and events into templates. PPI Finder (liweilab.genetics.ac.cn/tm/) [] is a web application aimed at mining human protein-protein interactions from PubMed abstracts. It is able to (i) find the genes related to the gene of inter […]


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PPI finder institution(s)
Key Laboratory of Molecular and Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Chaoyang District, Beijing, China

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