PPI3D specifications


Unique identifier OMICS_14683
Name PPI3D
Interface Web user interface
Restrictions to use None
Input data A protein sequence.
Input format FASTA
Output data A summary and a detailed list of the interactions found for each query sequence or each pair of sequences.
Computer skills Basic
Stability Stable
Maintained Yes



  • person_outline Ceslovas Venclovas

Publication for PPI3D

PPI3D citation


Shortening of the Lactobacillus paracasei subsp. paracasei BGNJ1 64 AggLb Protein Switches Its Activity from Auto aggregation to Biofilm Formation

Front Microbiol
PMCID: 5014864
PMID: 27660628
DOI: 10.3389/fmicb.2016.01422

[…] -aggregate (BGKP1-20/pPI4E; Figure ; Supplementary Table ). Alternatively, the absence of the other CnaB-like domains, did not cause a significant effect on auto-aggregation (BGKP1-20/pPI3C, BGKP1-20/pPI3D, BGKP1-20/pPI3E, BGKP1-20/pPI2B, BGKP1-20/pPI2D, BGKP1-20/pPI2E, BGKP1-20/pPI1A, BGKP1-20/pPI1D, and BGKP1-20/pPI1E; Figure ; Supplementary Table ). It is also interesting to note that an additi […]

PPI3D institution(s)
Institute of Biotechnology, Vilnius University, Vilnius, Lithuania; Faculty of Mathematics and Informatics, Vilnius University, Vilnius, Lithuania
PPI3D funding source(s)
This work has been supported by the intramural funds of Vilnius University and by postdoctoral fellowship funded by European Union Structural Funds project ‘Postdoctoral Fellowship Implementation in Lithuania’.

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