PPInterFinder specifications

Information


Unique identifier OMICS_04863
Name PPInterFinder
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Maintainer


  • person_outline Jeyakumar Natarajan

Publication for PPInterFinder

PPInterFinder citations

 (2)
library_books

Text Mining for Protein Docking

2015
PLoS Comput Biol
PMCID: 4674139
PMID: 26650466
DOI: 10.1371/journal.pcbi.1004630

[…] syntactic features to effectively capture PPI patterns from biomedical literature [, ]. eFIP mines information on phosphorylation and related interactions of a given protein using rule-based NLP []. PPInterFinder extracts Medline abstracts on human proteins using co-occurrences of protein names, specific keyword dictionary, and pattern matching []. BioQRator can annotate PPI-relevant entity relat […]

library_books

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

2013
PMCID: 3625048
PMID: 23327936
DOI: 10.1093/database/bas056

[…] rators from the MINT and BioGRID databases. The curation scenario was protein-centric, focusing on human kinases for which it is important to annotate protein interactions and phosphorylation events. PPInterFinder was evaluated at the sentence level where a true positive represents the number or proportion of interacting protein entities that were correctly identified by the system. The results sh […]

PPInterFinder institution(s)
Data Mining and Text Mining Laboratory, Department of Bioinformatics, Bharathiar University, Coimbatore, Tamil Nadu, India

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