PPISpan specifications

Information


Unique identifier OMICS_11240
Name PPISpan
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++
Computer skills Advanced
Stability No
Maintained No

Versioning


No version available

Maintainer


This tool is not available anymore.

Publication for PPISpan

PPISpan citation

library_books

Recent advances in clustering methods for protein interaction networks

2010
BMC Genomics
PMCID: 2999340
PMID: 21143777
DOI: 10.1186/1471-2164-11-S3-S10

[…] ording to semantic similarity between the proteins. Turanalp and Can [] mapped known functional annotations onto a protein interaction network and adopted a frequent pattern identification technique, PPISpan, to detect recurring functional interaction patterns instead of single clusters.With the rapidly expanding resource of microarray data and other biological information, such as structure profi […]

PPISpan institution(s)
Department of Computer Engineering, Selcuk University, Selcuklu, Konya, Turkey; Department of Computer Engineering, Middle East Technical University, Cankaya, Ankara, Turkey
PPISpan funding source(s)
Part of this work is supported by the Scientific and Technological Research Council of Turkey (TUBITAK) Career Program Grant #106E128.

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