Pplacer pipeline

Pplacer specifications


Unique identifier OMICS_01462
Name Pplacer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Computer skills Advanced
Stability Stable
Maintained Yes


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Publication for Pplacer

Pplacer IN pipeline

PMCID: 4410273
PMID: 25333462
DOI: 10.1038/ismej.2014.198

[…] (whelan, and goldman, 2001) of amino-acid evolution under the gamma model using raxml (stamatakis et al., 2008). finally, the environmental rubisco sequences were mapped on the reference tree using pplacer (matsen et al., 2010)., in july of 2007, 15 stations along a 700-km transect from san diego, ca out into the subtropical pacific (figure 1) were characterized with measurements from a ctd […]

Pplacer institution(s)
Computational Biology Program, Fred Hutchinson Cancer Research Center, Seattle, WA, USA

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