PPLine specifications

Information


Unique identifier OMICS_09512
Name PPLine
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for PPLine

PPLine in publications

 (2)
PMCID: 5249042
PMID: 28105938
DOI: 10.1186/s12864-016-3356-0

[…] obtain raw sequencing reads. the sequencing data were stored in fastq format. at least 25 million reads were obtained for each pool of flies., processing of transcriptomic data was performed using ppline toolkit [] including read preprocessing (trimmomatic), mapping (star) and counting (htseq-count). the further analysis was done with r programming language (r core team). the edger package […]

PMCID: 5083024
PMID: 27812617
DOI: 10.1590/1678-775720150421

[…] more posterior than for /i/., from the coronal landmarks (), the following distances were computed:, sm: the distance between palatal mucosa and the most upper point of tongue perpendicular to the ppline, made on the side with the smaller tongue-palate distance;, lg: the distance between palatal mucosa and the most upper point of tongue at perpendicular to the ppline, made on the side […]


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PPLine institution(s)
Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russia; Orekhovich Institute of Biomedical Chemistry, Russian Academy of Medical Sciences, Moscow, Russia; Mechnikov Research Institute of Vaccines and Sera, Moscow, Russia; Herzen Moscow Cancer Research Institute, Ministry of Healthcare of the Russian Federation, Moscow, Russia
PPLine funding source(s)
This work was supported by the Russian Science Foundation, grant no. 14-25-00132. Part of this work (the computational analysis) was performed using the equipment of the EIMB RAS Genome Center under the financial support of the Ministry of Education and Science of the Russian Federation (contract no. 14.621.21.0001, project unique identifier RFMEFI6114X0001).

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