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PPT-DB specifications


Unique identifier OMICS_03417
Restrictions to use None
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/PPT-DB

Publication for PPT-DB

PPT-DB citations


Computational and Experimental Approaches to Reveal the Effects of Single Nucleotide Polymorphisms with Respect to Disease Diagnostics

Int J Mol Sci
PMCID: 4100115
PMID: 24886813
DOI: 10.3390/ijms15069670

[…] ding rates. Other servers for calculating protein folding rates include K-Fold [], FOLD-RATE [,,], Prediction of long-range Contacts (PROFcon) [] and Protein Property Prediction and Testing Database (PPT-DB) [].Similarly, machine learning methods can also be used to predict protein aggregation properties. For example, the Protein Aggregation Prediction Server—Random Forest (ProA-RF) and ProA-SVM s […]


A Unified Multitask Architecture for Predicting Local Protein Properties

PLoS One
PMCID: 3312883
PMID: 22461885
DOI: 10.1371/journal.pone.0032235

[…] st performing coiled coil predictor is an HMM that uses evolutionary information .For the coiled coil prediction task, we downloaded a dataset used in the training of the Paircoil algorithm from the PPT-DB database server. The data set contains 776 proteins. In each of these proteins, consecutive 7-residue stretches in the coiled coil region are labeled with the sequence “abcdefg”. The most freq […]


PROTEUS2: a web server for comprehensive protein structure prediction and structure based annotation

Nucleic Acids Res
PMCID: 2447806
PMID: 18483082
DOI: 10.1093/nar/gkn255

[…] ce unchanged. In the next step, the query sequence is aligned against a specially constructed database of 275 solved helical membrane proteins. This membrane helix database was also obtained from the PPT-DB. If a significant (Expect <10−10) match is found, the resulting alignment is used to transfer the known secondary structure of the template membrane molecule to the query protein using the prev […]


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PPT-DB institution(s)
Department of Biological Sciences, Department of Computing Science, University of Alberta, Edmonton, AB, Canada

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