PRANK specifications

Information


Unique identifier OMICS_12425
Name PRANK
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format Fasta
Output format Fasta
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Ari L√∂ytynoja <>

PRANK article

PRANK citation

2017
PMCID: 5293829

[…] 20mers at each base, we were able to (1) map recombinant boundaries and (2) ascertain the extent of mixed populations using r software (r development core team, 2015)., genes were aligned using prank (l√∂ytynoja, 2014). the r package phangorn (schliep, 2010) was used to calculate maximum likelihood phylogeny using the symmetric+gi model (chosen based on best fit). trees were bootstrapped 100 […]

PRANK institution(s)
Institute of Biotechnology, University of Helsinki, Helsinki, Finland

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