Protocols

PRBR specifications

Information


Unique identifier OMICS_03028
Name PRBR
Alternative name Prediction of RNA-binding Residues
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained No

Publication for Prediction of RNA-binding Residues

PRBR citations

 (2)
call_split

A Large Scale Assessment of Nucleic Acids Binding Site Prediction Programs

2015
PLoS Comput Biol
PMCID: 4683125
PMID: 26681179
DOI: 10.1371/journal.pcbi.1004639
call_split See protocol

[…] ing 95% sequence identity in RNABindRPlus. KYG was predicted with command line using “method_type = 8” option. RBscore_SVM was based on the training set of R246. DBS-PSSM, DBS-Pred, RBRIdent, PPRInt, PRBR, DNABind, RBRDetector and ProteDNA were used with default parameter. The DISPLAR program was provided by Sanbo Qin and was run with default parameters. BindN and BindN+ were used by default param […]

library_books

A Survey of Computational Intelligence Techniques in Protein Function Prediction

2014
Int J Proteomics
PMCID: 4276698
PMID: 25574395
DOI: 10.1155/2014/845479

[…] tor machine with polynomial kernel, and support vector machine with radial basis function. It was observed by the authors of the paper that the proposed method outperformed five other classifiers.The prediction of RNA binding residues is necessary for understanding the function and mechanism of biological activities involved in RNA-protein interactions. So for the prediction of RNA binding sites i […]

PRBR institution(s)
State Key Laboratory of Bioelectronics, Southeast University, Nanjing, China

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