preAssemble statistics

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preAssemble specifications

Information


Unique identifier OMICS_22816
Name preAssemble
Alternative name Salmon Genome Project preassemble
Interface Web user interface
Restrictions to use None
Output data A file countaining colour coded processed sequences and links to files with supplementary data, colour-coded sequence with the quality values assigned by Phred and an experiment file.
Output format HTML+EXP
Computer skills Basic
Maintained No

Maintainers


This tool is not maintained anymore.

Information


Unique identifier OMICS_22816
Name preAssemble
Alternative name Salmon Genome Project preassemble
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Output data A file countaining colour coded processed sequences and links to files with supplementary data, colour-coded sequence with the quality values assigned by Phred and an experiment file.
Output format HTML+EXP
Operating system Unix/Linux
Programming languages Perl
License SGP preassemble license
Computer skills Advanced
Requirements
Phred, Staden package
Maintained No

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Publication for preAssemble

preAssemble in publication

PMCID: 1913521
PMID: 17605782
DOI: 10.1186/1471-2164-8-209

[…] files or chromatograms (raw data) were loaded into the sgp database using the web-based submission interface. after loading the chromatograms were pre-processed using the sgp pre-processing pipeline preassemble [] which utilises staden pregap4 [,]. the pipeline was developed for automatic large scale processing of the dna trace files and produces detailed output, which can be viewed with a web […]


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preAssemble institution(s)
Norwegian School of Veterinary Science, BasAM – Genetics, Oslo, Norway; Centre for Molecular Biology and Neuroscience (CMBN) Institute of Medical Microbiology, Oslo, Norway; Engelhardt Institute of Molecular Biology, Moscow, Russia; The Biotechnology Centre of Oslo, University of Oslo, Blindern, Oslo, Norway
preAssemble funding source(s)
Supported by the Norwegian Research Council and the Presidium of RAS grant "Molecular and Cell Biology".

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