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PRED-LIPO specifications

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Unique identifier OMICS_03889
Name PRED-LIPO
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for PRED-LIPO

PRED-LIPO in publications

 (16)
PMCID: 5953858
DOI: 10.6026/97320630014113

[…] microsoft excel 2016 version for mac. the methodology workflow is presented in ., prediction of lipoprotein and secretory signal peptides in grampositive bacteria was done for each sequences using pred-lipo (http://bioinformatics.biol.uoa.gr/pred-lipo/), a web server that used hidden markov models (hmm). this was validated using cw-pred (http://bioinformatics.biol.uoa.gr/cw-pred/), a tool […]

PMCID: 5826277
PMID: 29515544
DOI: 10.3389/fmicb.2018.00262

[…] id. the breakdown by localization is graphed as a pie chart. the uniprot id was utilized to extract the protein sequence. the lipoprotein, and secretory signal peptides were predicted using pred-lipo ()., staphylococcus aureus mssa476 was grown overnight in tryptic soy broth. the next day, the culture was diluted and further grown in bhi and lb broth, washed in pbs, resuspended in bhi […]

PMCID: 5727369
PMID: 28901671
DOI: 10.1002/mbo3.525

[…] by epson scanner., first, we investigated how frequent is asp+2 is gram‐positive lpp. we used pred‐lipo prediction program for analyzing lpp of gram‐positive bacteria (http://biophysics.biol.uoa.gr/pred-lipo-results/) (bagos, tsirigos, liakopoulos, & hamodrakas, ). the program includes lpp data of 179 gram‐positive species and strains. there are three species representatives that lacked […]

PMCID: 5426083
PMID: 28553620
DOI: 10.3389/fcimb.2017.00177

[…] genomes (kegg) database (http://www.kegg.jp/kegg-bin/show_organism?menu_type=pathway_maps&org=mbi), respectively. to determine whether proteins are secreted and contain a signal peptide, we used pred-lipo (http://bioinformatics.biol.uoa.gr/pred-lipo/input.jsp), the signalp 4.1 server for the prediction of classical secreted proteins (http://www.cbs.dtu.dk/services/signalp/), […]

PMCID: 5393609
PMID: 28414739
DOI: 10.1371/journal.pone.0175541

[…] score of ≥ 0.5 were judged to be potentially secreted. tmhmm 2.0 (http://www.cbs.dtu.dk/services/tmhmm/) [] was used to identify which protein loci are encoding transmembrane helical regions and pred-lipo (http://biophysics.biol.uoa.gr/pred-lipo/) [] was used to predict any putative lipoproteins. detection of possible sortase-dependent proteins (sdps) was done with the cw-pred method […]


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PRED-LIPO institution(s)
Department of Cell Biology and Biophysics, Faculty of Biology, University of Athens, Athens, Greece

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