PREDA specifications

Information


Unique identifier OMICS_19133
Name PREDA
Alternative name Position RElated Data Analysis
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.23.0
Stability Stable
Requirements
Biobase, lokern, multtest, stats, methods, annotate
Source code URL http://www.xlab.unimo.it/PREDA/PREDAsampledata_0.1.7.tar.gz
Maintained Yes

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Versioning


No version available

Documentation


Maintainers


  • person_outline Silvio Bicciato
  • person_outline Francesco Ferrari

Publication for Position RElated Data Analysis

PREDA citation

library_books

Comparative genomics and transcriptional profiles of Saccharopolyspora erythraea NRRL 2338 and a classically improved erythromycin over producing strain

2012
Microb Cell Fact
PMCID: 3359211
PMID: 22401291
DOI: 10.1186/1475-2859-11-32

[…] ts of genes up-regulated during phase a either in both strains or in Px or in NRRL 2338 are reported, respectively, in Additional files , , .The Locally Adaptive Statistical Procedure (LAP) [] of the PREDA package [ref] was used to identify differentially expressed chromosomal regions (Figure ). LAP analysis showed significant up-regulation of many genes clustered in the "core" region of the chrom […]

PREDA institution(s)
Department of Biomedical Sciences, Center for Genome Research, University of Modena and Reggio Emilia, Modena, Italy; Department of Statistics, University of Milano-Bicocca, Milano, Italy; Department of Biomedical Sciences and Technologies, University of Milano, Milano, Italy
PREDA funding source(s)
Supported by HPC-EUROPA2 Project (211437); MIUR (PRIN2007Y84HTJ, FIRB RBNE01HCKF and RBRN07BMCT) and AIRC Special Program Molecular Clinical Oncology 5 per Mille 2010.

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