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PREDA specifications

Information


Unique identifier OMICS_19133
Name PREDA
Alternative name Position RElated Data Analysis
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.23.0
Stability Stable
Requirements
Biobase, lokern, multtest, stats, methods, annotate
Source code URL http://www.xlab.unimo.it/PREDA/PREDAsampledata_0.1.7.tar.gz
Maintained Yes

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Maintainers


  • person_outline Silvio Bicciato <>
  • person_outline Francesco Ferrari <>

Publication for Position RElated Data Analysis

PREDA in publications

 (61)
PMCID: 5920407
PMID: 29732368
DOI: 10.3389/fchem.2018.00124

[…] equation to the shape of the sessile drop. then, the slope of the tangent to the drop at the liquid-solid vapor interface line was calculated. (zgura et al., , ; popescu et al., ; duta et al., ; preda et al., )., for scanning electron microscopy (sem) analysis, freeze, and dried particles (e.g., bio-composites and original/functionalized supports) were examined using a jeol instrument […]

PMCID: 5898685
PMID: 29637816
DOI: 10.1177/0963689717721514

[…] responsible for binding the troponin–tropomyosin complex to actin. the presence of connexin 43 is suggestive of functional characteristics of the muse cells converted into cardiomyocyte-like cells. preda et al. reported that igf-1 and bfgf, both of which were included in our protocol, enhance connexin 43 mrna and protein expression in murine bm-mscs., directed atrial and ventricular […]

PMCID: 5907646
PMID: 29721254
DOI: 10.4081/hr.2018.7515

[…] chromosomal regions between cd34+ and cd14- samples have been identified using the lap procedure, with the significance analysis of microarray algorithm (sam) two-class statistics coded in the preda r package. the percentage of false positive predictions was estimated with 10000 permutations and the q-value (i.e., false discovery rate, fdr) threshold was set to 0.5. functional […]

PMCID: 5894120
PMID: 29562189
DOI: 10.1016/j.celrep.2018.02.081

[…] around implants, the fiber tract was used to determine the slice nearest the tip. expression area was determined by thresholding the fluorescence channel in imagej., we thank d. kaplan and c. preda for reagents and helpful discussions and m. ocana and the neurobiology imaging center for microscopy help. we also thank j. vazquez for illustrations and all members of the w.g.r. lab […]

PMCID: 5879909
PMID: 29557387
DOI: 10.4103/1673-5374.226406

[…] deep brain stimulation (dbs) in the subthalamic nucleus (stn) is regarded as the most effective therapy for moderate and advanced parkinson's disease (pd) (pahwa et al., 2003; moldovan et al., 2015; preda et al., 2016), particularly for those with refractory motor fluctuations and drug-induced complications (benabid et al., 2009; rodriguez-oroz et al., 2012; odekerken et al., 2013; jiang et al., […]


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PREDA institution(s)
Department of Biomedical Sciences, Center for Genome Research, University of Modena and Reggio Emilia, Modena, Italy; Department of Statistics, University of Milano-Bicocca, Milano, Italy; Department of Biomedical Sciences and Technologies, University of Milano, Milano, Italy
PREDA funding source(s)
Supported by HPC-EUROPA2 Project (211437); MIUR (PRIN2007Y84HTJ, FIRB RBNE01HCKF and RBRN07BMCT) and AIRC Special Program Molecular Clinical Oncology 5 per Mille 2010.

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