PredAlgo statistics

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Citations per year

Number of citations per year for the bioinformatics software tool PredAlgo
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Tool usage distribution map

This map represents all the scientific publications referring to PredAlgo per scientific context
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Protocols

PredAlgo specifications

Information


Unique identifier OMICS_07472
Name PredAlgo
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Laurent Courc

Publication for PredAlgo

PredAlgo citations

 (28)
library_books

Surprisal analysis of genome wide transcript profiling identifies differentially expressed genes and pathways associated with four growth conditions in the microalga Chlamydomonas

2018
PLoS One
PMCID: 5903653
PMID: 29664904
DOI: 10.1371/journal.pone.0195142

[…] s of three isoforms of the heat shock protein HSP22 contribute to the dark-grown phenotype (). The HSP22C isoform is targeted to mitochondria while HSP22E and F are targeted to chloroplast when using Predalgo for prediction [], suggesting proteins modifications inside the chloroplast and mitochondria. Transcripts encoding transporters are also found important to describe the dark-grown samples. In […]

library_books

Neochloris oleoabundans is worth its salt: Transcriptomic analysis under salt and nitrogen stress

2018
PLoS One
PMCID: 5898717
PMID: 29652884
DOI: 10.1371/journal.pone.0194834

[…] anch from NCBI, Uniprot (SwissProt + Trembl) filtered for proteins with an annotated enzymatic reaction.Three tools were used to predict the subcellular location of the predicted enzymes: TargetP [], PredAlgo [] and WoLF PSORT []. Four common cellular locations were identified: chloroplast, mitochondrion, secretory pathway, and cytoplasmic. In the case of WoLF-PSORT, the localizations defined as e […]

library_books

Embryophyte stress signaling evolved in the algal progenitors of land plants

2018
Proc Natl Acad Sci U S A
PMCID: 5899452
PMID: 29581286
DOI: 10.1073/pnas.1719230115

[…] Perl script to select those transcripts whose ORFs included the N-terminal region and predicted the subcellular localization of the proteins encoded by these ORFs using TargetP (), LOCALIZER (), and PredAlgo (). We considered a protein to be plastid localized if two of these three programs predicted a plastid (chloroplast) localization. Word clouds of any kind were generated using wordle.net in a […]

library_books

Pyrenoid functions revealed by proteomics in Chlamydomonas reinhardtii

2018
PLoS One
PMCID: 5826530
PMID: 29481573
DOI: 10.1371/journal.pone.0185039

[…] to their subcellular localization (). The intracellular localization of each protein (except those encoded by the chloroplast genome and, therefore, known to be in this organelle) was predicted using Predalgo, a program that predicts the intracellular localization of a query protein in green algae to one of three intracellular compartments: the chloroplast, mitochondria, or the secretory pathway [ […]

library_books

Identification and analysis of OsttaDSP, a phosphoglucan phosphatase from Ostreococcus tauri

2018
PLoS One
PMCID: 5779698
PMID: 29360855
DOI: 10.1371/journal.pone.0191621

[…] ced amino acid sequence of pre-OsttaDSP shares high sequence identity with its counterpart from A. thaliana: 37.4% identity and 52.3% similarity and the same domain topography ( and ). Analysis using PredAlgo [] sowed that pre-OsttaDSP contains a predicted 26 amino acid chloroplastic transit peptide at the N-terminus (), suggesting that OsttaDSP is targeted to the chloroplast and rendering a matur […]

library_books

Deletion of CGLD1 Impairs PSII and Increases Singlet Oxygen Tolerance of Green Alga Chlamydomonas reinhardtii

2017
Front Plant Sci
PMCID: 5736878
PMID: 29326747
DOI: 10.3389/fpls.2017.02154

[…] ic region in x32 revealed a DNA rearrangement that resulted in the deletion of five genes, i.e., Cre02.g084250, Cre02.g084300, Cre02.g084350, Cre02.g084400, and Cre02.g084450 (Figure ). Prediction by PredAlgo software shows that only the gene Cre02.g084350 encoding CGLD1 in the GreenCut2 () is localized in the chloroplast. We therefore introduced the gene into x32 for complementation. The x32 muta […]


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PredAlgo institution(s)
CEA, DSV, IRTSV, Grenoble, France

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