PredαTM and PredβTM statistics

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Citations per year

Number of citations per year for the bioinformatics software tool PredαTM and PredβTM

Tool usage distribution map

This map represents all the scientific publications referring to PredαTM and PredβTM per scientific context
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PredαTM and PredβTM specifications


Unique identifier OMICS_12176
Name PredαTM and PredβTM
Alternative name Transmembrane Region Predictors
Interface Web user interface
Restrictions to use None
Input data Multiline field to enter protein sequence(s)
Input format Plain text or FASTA
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline Amrita Roy Choudhury

Publications for Transmembrane Region Predictors

PredαTM and PredβTM citation


Computational and experimental approaches to chart the Escherichia coli cell envelope associated proteome and interactome

FEMS Microbiol Rev
PMCID: 2704936
PMID: 19054114
DOI: 10.1111/j.1574-6976.2008.00141.x

[…] tectors. For instance, Phobius () uses an HMM- and homology-based strategy to predict TIMP topologies and signal peptides. Similarly, conpred ii () combines the outputs from several TIMP topology and transmembrane region predictors to create a unified model reportedly more accurate than the parental individual methods (), and also allows to activate a signal peptide detector. In contrast, memsat3 […]

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PredαTM and PredβTM institution(s)
Laboratory of Chemometrics, National Institute of Chemistry, Ljubljana, Slovenia
PredαTM and PredβTM funding source(s)
This work is supported by the Ministry of Higher Education, Science and Technology of the Republic of Slovenia [P1-017, J1-2151], as well as by the European Regional Development Fund (Cross-border Collaboration Italy-Slovenia 2007-2013, TRANS2CARE strategic project).

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