Identifies putative transcription factor-binding sites (TFBS) in bacterial genomes. PREDetector allows users to freely fix the DNA-motif screening parameters, and provides a statistical means to estimate the reliability of the prediction output. The version 2.0 offers an interactive table as well as graphics to dynamically alter the main screening parameters with automatic update of the list of identified putative TFBS. PREDetector 2.0 also has the following additional options: (i) access to genome sequences from different databases, (ii) access to weight matrices from public repositories, (iii) visualization of the predicted hits in their genomic context, (iv) grouping of hits identified in the same upstream region, (v) possibility to store the performed jobs, and (vi) automated export of the results in various formats.
InBioS - PhytoSYSTEMS, University of Liège, Liège, Belgium; Hedera-22 SCRL, Esneux, Belgium; InBioS - Center for Protein Engineering, University of Liège, Liège, Belgium; Systems and Modeling - Montefiore Institute, University of Liège, Liège, Belgium; Microbial Biotechnology - Institute of Biology, Leiden University, Leiden, Netherlands
PREDetector funding source(s)
This work is supported by a First Spin-off grant from the Walloon Region [Grant number: 1510530; FSO AntiPred].