PREDetector pipeline

PREDetector specifications

Information


Unique identifier OMICS_13575
Name PREDetector
Interface Web user interface
Restrictions to use License purchase required
Programming languages R
Database management system SQLite
Computer skills Basic
Version 2.0
Stability Beta
Maintained Yes

Maintainer


  • person_outline Sébastien Rigali <>

Publication for PREDetector

PREDetector citation

2008
PMCID: 2475637

[…] a dna sequence logo describing the binding motif was then generated using weblogo (http://weblogo.berkeley.edu/). for rutr, each of the 20 binding sites identified by chip-chip were aligned in predetector (9) and a position weight matrix (pwm) was generated to describe the information content of the binding site. each target was then assigned a score depending on how it matched the pwm. […]

PREDetector institution(s)
InBioS - PhytoSYSTEMS, University of Liège, Liège, Belgium; Hedera-22 SCRL, Esneux, Belgium; InBioS - Center for Protein Engineering, University of Liège, Liège, Belgium; Systems and Modeling - Montefiore Institute, University of Liège, Liège, Belgium; Microbial Biotechnology - Institute of Biology, Leiden University, Leiden, Netherlands
PREDetector funding source(s)
This work is supported by a First Spin-off grant from the Walloon Region [Grant number: 1510530; FSO AntiPred].

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