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PredGPI specifications

Information


Unique identifier OMICS_07284
Name PredGPI
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for PredGPI

PredGPI in publications

 (85)
PMCID: 5955465
PMID: 29726301
DOI: 10.1080/21505594.2018.1456228

[…] [], and a cleavage site was predicted between the 26th and 27th amino acids ( and ). although an ω site at the position of the 700th amino acid was predicted by the predgpi website (http://gpcr.biocomp.unibo.it/predgpi/), this prediction is less likely to be accurate due to a very low specificity (32.5%) ( and ) []. interestingly, four tandem repeats were found […]

PMCID: 5956992
PMID: 29678234
DOI: 10.1016/j.vetimm.2018.03.004

[…] we performed a bioinformatics search of the re-annotated t. parva genome (cited in ) for proteins predicted to contain a c-terminal gpi anchor signal and/or an n-terminal signal peptide using predgpi () and signalp 4.1 (), respectively. following predgpi analysis, gpi-proteins were sorted based on their hidden markov model (hmm) scores in decreasing order of prediction accuracy, […]

PMCID: 5919931
PMID: 29700415
DOI: 10.1038/s41598-018-25016-4

[…] a signal peptide in the n-terminus was predicted using signalp 4.1 (http://www.cbs.dtu.dk/services/signalp/) and phobius (http://phobius.sbc.su.se/). the presence of gpi anchor was predicted using predgpi (http://gpcr.biocomp.unibo.it/predgpi/) and big-pi (http://mendel.imp.ac.at/gpi/fungi_server.html). the presence of tm domain was predicted using tmhmm 2.0 […]

PMCID: 5917426
DOI: 10.1128/mSphere.00023-18

[…] the presence of a signal peptide, a glycosylphosphatidylinositol (gpi) anchor, and serine-threonine-rich sites that would comprise the glycosylation site (). employing a combination of signalp (), predgpi (), and glycoep () analyses, the presence of 34 mannoprotein-coding genes in c. gattii r265 genome was predicted (see  in the supplemental material). profile assignments employing […]

PMCID: 5949005
PMID: 29686080
DOI: 10.1073/pnas.1802354115

[…] of the plasma membrane), putative transmembrane proteins based on analysis of the uniprot proteome of homo sapiens using tmhmm (version 2.0) (), and predictions of gpi-anchored proteins from predgpi ()., rna was isolated from human prostate cancer cell lines by using an mirneasy mini kit (qiagen). libraries for rna-seq were prepared by using a truseq rna library prep kit (version 2; […]


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PredGPI institution(s)
Biocomputing Group, Department of Biology, University of Bologna, Bologna, Italy

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