PARE specifications

Information


Unique identifier OMICS_11507
Name PARE
Alternative name Predict Active Regulatory Elements
Interface Web user interface
Restrictions to use None
Input data Some mapped reads.
Input format BAM
Output data The genomic coordinates of predictions and a UCSC track.
Output format BED
License GNU General Public License version 3.0
Computer skills Basic
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Bo T. Porse <>

Additional information


http://servers.binf.ku.dk/pare/help.php http://servers.binf.ku.dk/pare/help.php

Information


Unique identifier OMICS_11507
Name PARE
Alternative name Predict Active Regulatory Elements
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Some mapped reads.
Input format BAM
Operating system Unix/Linux
Programming languages C, Perl, R, Shell (Bash)
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.08
Stability Stable
Maintained Yes

Download


Versioning


Add your version

Maintainer


  • person_outline Bo T. Porse <>

Additional information


http://servers.binf.ku.dk/pare/help.php http://servers.binf.ku.dk/pare/help.php

PARE article

PARE institution(s)
The Finsen Laboratory, Rigshospitalet, Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark; Biotech Research and Innovation Centre (BRIC), University of Copenhagen, Copenhagen, Copenhagen, Denmark; Danish Stem Cell Centre (DanStem), Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark; The Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark
PARE funding source(s)
Supported by the NovoNordisk Foundation; Danish Research Council for Strategic Research; The Lundbeck Foundation; NovoNordisk Foundation centre grant (The Novo Nordisk Foundation section for Stem Cell biology in Human Disease).

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