PredictNLS statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool PredictNLS
info

Tool usage distribution map

This map represents all the scientific publications referring to PredictNLS per scientific context
info info

Associated diseases

This word cloud represents PredictNLS usage per disease context
info

Popular tool citations

chevron_left Subcellular localization prediction chevron_right
Want to access the full stats & trends on this tool?

Protocols

PredictNLS specifications

Information


Unique identifier OMICS_01633
Name PredictNLS
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Download


galaxy.png
debian.png

Versioning


No version available

Maintainer


  • person_outline Burkhard Rost

Additional information


https://rostlab.org/owiki/index.php/PredictNLS

Information


Unique identifier OMICS_01633
Name PredictNLS
Interface Web user interface
Restrictions to use None
Input data A protein sequence or a potential NLS.
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Burkhard Rost

Additional information


https://rostlab.org/owiki/index.php/PredictNLS

Publication for PredictNLS

PredictNLS citations

 (98)
library_books

Contrasting Function of Structured N Terminal and Unstructured C Terminal Segments of Mycobacterium tuberculosis PPE37 Protein

2018
MBio
PMCID: 5784249
PMID: 29362230
DOI: 10.1128/mBio.01712-17

[…] e extensive variations within the disordered C-terminal segment that carries a stronger and more pronounced NLS extending from residues 402 to 425 (see in the supplemental material), as predicted by PredictNLS. The presence of a stronger NLS in the more prevalent and virulent F11 strain and the conservation of the NLS sequence in an otherwise rapidly evolving disordered region () () suggest an im […]

library_books

Protein interaction network of alternatively spliced NudCD1 isoforms

2017
Sci Rep
PMCID: 5636827
PMID: 29021621
DOI: 10.1038/s41598-017-13441-w

[…] localization of NudCD1 isoform 3 (Fig. ). These results demonstrate that each isoform of NudCD1 have distinct subcellular distribution.Figure 2 A nuclear localization signal (NLS) was predicted using PredictNLS as RVKR in the amino acids 10–13 presents in isoform 1 of NudCD1. To confirm this NLS, we mutated the basic amino acids to alanines (RVKR to AVAA) in our GFP-expressing construct of NudCD1 […]

library_books

Small secreted proteins from the necrotrophic conifer pathogen Heterobasidion annosum s.l. (HaSSPs) induce cell death in Nicotiana benthamiana

2017
Sci Rep
PMCID: 5554239
PMID: 28801666
DOI: 10.1038/s41598-017-08010-0

[…] proteins in the H. annosum TC 32-1 genome. The list was then condensed by removing transmembrane, mitochondrial, and nuclear proteins using TMHMM (http://www.cbs.dtu.dk/services/TMHMM/), TargetP, and PredictNLS. Additionally, proteins with a predicted InterPro domain and wood-degrading enzymes were removed in order to focus only on novel and uncharacterized HaSSPs. Finally, we predicted disulfide […]

library_books

Genome wide survey of heat shock factors and heat shock protein 70s and their regulatory network under abiotic stresses in Brachypodium distachyon

2017
PLoS One
PMCID: 5500289
PMID: 28683139
DOI: 10.1371/journal.pone.0180352

[…] ns within the Hsf and Hsp70 gene family in B. distachyon genomes were based on the information from the Plant Genome Duplication Database (http://chibba.agtec.uga.edu/duplication/index/locus). SMART, PredictNLS, and NetNES1.1 were used to check DBD domains and coiled-coil structures and NLS and NES domains of BdHsfs, and protein domains of BdHsp70s were predicted using InterProScan and Conserved D […]

library_books

Time resolved dual transcriptomics reveal early induced Nicotiana benthamiana root genes and conserved infection promoting Phytophthora palmivora effectors

2017
BMC Biol
PMCID: 5427549
PMID: 28494759
DOI: 10.1186/s12915-017-0379-1

[…] //hmmer.org/); (5) LXLFLAK and HVLVVVP motif predictions based on HMM model build on sequences of known CRN effectors; (6) NLS motif prediction by NLStradamus [] (v1.8, posterior threshold = 0.6) and PredictNLS [] with default parameters. The TribeMCL algorithm was used to cluster predicted putative secreted proteins with signal peptide and after signal peptide cleavage (mature proteins). The trib […]

library_books

Noumeavirus replication relies on a transient remote control of the host nucleus

2017
Nat Commun
PMCID: 5413956
PMID: 28429720
DOI: 10.1038/ncomms15087

[…] an 5.14-53. A CD-search was achieved against the conserved domain database at NCBI. Potential (trans)membrane proteins were predicted using Phobius. Nuclear signal peptides were predicted by NucPred, PredictNLS, NLStradamus and Nucleolar localization sequence detector (NOD). The results were manually compiled and the most representative function was assigned to each sequence. Seven genes initially […]


Want to access the full list of citations?
PredictNLS institution(s)
CUBIC, Columbia University, Department of Biochemistry and Molecular Biophysics, New York, NY, USA

PredictNLS reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review PredictNLS