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|Restrictions to use||None|
|Database management system||PostgreSQL|
|User data submission||Not allowed|
Publication for Predictome
Functional association networks as priors for gene regulatory network inference
[…] te an undirected, confidence-weighted likelihood matrix that can be easily incorporated as a prior into a GRN inference method. used first-generation functional association databases Prolinks () and Predictome () as part of a gene biclustering algorithm but not explicitly in the network inference. To our knowledge no one has extensively studied the potential of undirected, unsigned, confidence-we […]
Construction and analysis of protein–protein interaction networks
[…] The Predictome  database houses links between the proteins of 44 genomes based on the implementation of gene context functional linkage methods, viz. chromosomal proximity, phylogenetic profiling and do […]
Predicting protein linkages in bacteria: Which method is best depends on task
[…] Currently, several databases that compile functional linkages from genomic context predictions are available, including Prolinks , STRING , PLEX , Predictome and more recently InPrePPI . We used the Prolinks v2.0 database as a source of predictions because it implements all of the four functional prediction methods and is publicly available. […]
Cross species cluster co conservation: a new method for generating protein interaction networks
[…] it conflates co-conservation with orthology information from the COG database ; we used COG functional category and TIGR functional role category data to evaluate purely co-conservation inferences. Predictome  was not used because it does not provide statistical measures to evaluate the accuracy of each prediction. For each pair assignment (CC), we required a confidence scheme using phylogenet […]
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